Hb_004223_290

Information

Type -
Description -
Location Contig4223: 213924-220033
Sequence    

Annotation

kegg
ID rcu:RCOM_1596950
description hypothetical protein
nr
ID XP_012073845.1
description PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
swissprot
ID Q9FXI5
description Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
trembl
ID A0A067KPK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08244 PE=4 SV=1
Gene Ontology
ID GO:0005515
description calmodulin-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41785: 213873-219764 , PASA_asmbl_41786: 213755-219872
cDNA
(Sanger)
(ID:Location)		 025_I08.ab1: 216403-218336

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_290 0.0 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
2 Hb_004875_030 0.0534605675 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
3 Hb_000345_360 0.0587521378 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
4 Hb_000035_410 0.079401584 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
5 Hb_002044_050 0.0855499475 - - -
6 Hb_000785_040 0.0867784815 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
7 Hb_041828_010 0.0885849153 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
8 Hb_017295_010 0.0907561009 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
9 Hb_000990_090 0.0910041476 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
10 Hb_000261_100 0.0925123694 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
11 Hb_000780_190 0.0935039503 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
12 Hb_004659_020 0.0941592254 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
13 Hb_002044_170 0.0950114946 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
14 Hb_009529_030 0.097059145 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
15 Hb_030627_060 0.0978693711 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
16 Hb_008484_010 0.0985713551 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
17 Hb_001948_130 0.0988236 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
18 Hb_000004_030 0.0991822754 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
19 Hb_000264_350 0.0994524157 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
20 Hb_001504_040 0.1008194336 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004223_290 Hb_004223_290 Hb_004875_030 Hb_004875_030 Hb_004223_290--Hb_004875_030 Hb_000345_360 Hb_000345_360 Hb_004223_290--Hb_000345_360 Hb_000035_410 Hb_000035_410 Hb_004223_290--Hb_000035_410 Hb_002044_050 Hb_002044_050 Hb_004223_290--Hb_002044_050 Hb_000785_040 Hb_000785_040 Hb_004223_290--Hb_000785_040 Hb_041828_010 Hb_041828_010 Hb_004223_290--Hb_041828_010 Hb_004875_030--Hb_000345_360 Hb_000990_090 Hb_000990_090 Hb_004875_030--Hb_000990_090 Hb_004875_030--Hb_002044_050 Hb_001486_070 Hb_001486_070 Hb_004875_030--Hb_001486_070 Hb_009529_030 Hb_009529_030 Hb_004875_030--Hb_009529_030 Hb_000345_360--Hb_000990_090 Hb_000345_360--Hb_009529_030 Hb_002391_290 Hb_002391_290 Hb_000345_360--Hb_002391_290 Hb_000345_360--Hb_041828_010 Hb_000261_030 Hb_000261_030 Hb_000035_410--Hb_000261_030 Hb_032920_130 Hb_032920_130 Hb_000035_410--Hb_032920_130 Hb_001235_230 Hb_001235_230 Hb_000035_410--Hb_001235_230 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000035_410--Hb_000785_040 Hb_002044_170 Hb_002044_170 Hb_000035_410--Hb_002044_170 Hb_007426_150 Hb_007426_150 Hb_002044_050--Hb_007426_150 Hb_000209_070 Hb_000209_070 Hb_002044_050--Hb_000209_070 Hb_001366_210 Hb_001366_210 Hb_002044_050--Hb_001366_210 Hb_005731_090 Hb_005731_090 Hb_002044_050--Hb_005731_090 Hb_007062_020 Hb_007062_020 Hb_000785_040--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_000785_040--Hb_027380_140 Hb_001025_080 Hb_001025_080 Hb_000785_040--Hb_001025_080 Hb_001473_090 Hb_001473_090 Hb_000785_040--Hb_001473_090 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_000004_030 Hb_000004_030 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7509 19.9036 13.6459 33.4427 38.5782 40.5371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9909 6.3761 13.6475 21.1753 26.9164

CAGE analysis