Hb_002044_050

Information

Type -
Description -
Location Contig2044: 79494-83264
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21000: 79453-82391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_050 0.0 - - -
2 Hb_007426_150 0.0818405706 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
3 Hb_004875_030 0.0824764028 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
4 Hb_004223_290 0.0855499475 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
5 Hb_000209_070 0.0903712191 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
6 Hb_001366_210 0.0945408883 - - cathepsin B, putative [Ricinus communis]
7 Hb_005731_090 0.0964758719 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
8 Hb_000037_110 0.1008024615 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
9 Hb_000025_650 0.1010434972 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
10 Hb_000029_320 0.101969631 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
11 Hb_030627_060 0.1024940901 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
12 Hb_001473_090 0.1027764837 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
13 Hb_002070_070 0.1033479489 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000345_360 0.1036088369 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
15 Hb_000329_090 0.1047730519 - - arginase, putative [Ricinus communis]
16 Hb_000021_040 0.105574647 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
17 Hb_001301_090 0.1092158567 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009529_030 0.1092972901 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
19 Hb_000160_290 0.109831512 - - unnamed protein product [Vitis vinifera]
20 Hb_000933_020 0.1103034023 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002044_050 Hb_002044_050 Hb_007426_150 Hb_007426_150 Hb_002044_050--Hb_007426_150 Hb_004875_030 Hb_004875_030 Hb_002044_050--Hb_004875_030 Hb_004223_290 Hb_004223_290 Hb_002044_050--Hb_004223_290 Hb_000209_070 Hb_000209_070 Hb_002044_050--Hb_000209_070 Hb_001366_210 Hb_001366_210 Hb_002044_050--Hb_001366_210 Hb_005731_090 Hb_005731_090 Hb_002044_050--Hb_005731_090 Hb_001195_560 Hb_001195_560 Hb_007426_150--Hb_001195_560 Hb_000933_020 Hb_000933_020 Hb_007426_150--Hb_000933_020 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_011618_080 Hb_011618_080 Hb_007426_150--Hb_011618_080 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_000429_220 Hb_000429_220 Hb_007426_150--Hb_000429_220 Hb_000345_360 Hb_000345_360 Hb_004875_030--Hb_000345_360 Hb_004875_030--Hb_004223_290 Hb_000990_090 Hb_000990_090 Hb_004875_030--Hb_000990_090 Hb_001486_070 Hb_001486_070 Hb_004875_030--Hb_001486_070 Hb_009529_030 Hb_009529_030 Hb_004875_030--Hb_009529_030 Hb_004223_290--Hb_000345_360 Hb_000035_410 Hb_000035_410 Hb_004223_290--Hb_000035_410 Hb_000785_040 Hb_000785_040 Hb_004223_290--Hb_000785_040 Hb_041828_010 Hb_041828_010 Hb_004223_290--Hb_041828_010 Hb_001473_090 Hb_001473_090 Hb_000209_070--Hb_001473_090 Hb_022250_110 Hb_022250_110 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000029_320 Hb_000029_320 Hb_000209_070--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_000209_070--Hb_003464_020 Hb_001366_210--Hb_005731_090 Hb_030627_060 Hb_030627_060 Hb_001366_210--Hb_030627_060 Hb_007635_030 Hb_007635_030 Hb_001366_210--Hb_007635_030 Hb_000375_130 Hb_000375_130 Hb_001366_210--Hb_000375_130 Hb_001454_280 Hb_001454_280 Hb_001366_210--Hb_001454_280 Hb_002174_020 Hb_002174_020 Hb_001366_210--Hb_002174_020 Hb_005731_090--Hb_002174_020 Hb_004453_110 Hb_004453_110 Hb_005731_090--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_005731_090--Hb_008112_030 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_005731_090--Hb_000160_290 Hb_005731_090--Hb_030627_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.0505 34.3677 17.8657 47.5057 79.7843 56.4938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3026 11.0452 21.5558 26.8891 33.5666

CAGE analysis