Hb_001366_210

Information

Type -
Description -
Location Contig1366: 152011-155707
Sequence    

Annotation

kegg
ID rcu:RCOM_1341910
description cathepsin B, putative (EC:3.4.22.1)
nr
ID XP_002515139.1
description cathepsin B, putative [Ricinus communis]
swissprot
ID Q5R6D1
description Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1
trembl
ID B9RN00
description Cathepsin B, putative OS=Ricinus communis GN=RCOM_1341910 PE=3 SV=1
Gene Ontology
ID GO:0004197
description cathepsin b-like protease family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10087: 152035-155673 , PASA_asmbl_10088: 155064-155270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_210 0.0 - - cathepsin B, putative [Ricinus communis]
2 Hb_005731_090 0.0690234161 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
3 Hb_030627_060 0.0810752766 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
4 Hb_007635_030 0.0864927849 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
5 Hb_000375_130 0.0892708969 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
6 Hb_001454_280 0.0902266959 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
7 Hb_002174_020 0.0919085662 - - ring finger protein, putative [Ricinus communis]
8 Hb_008112_030 0.0919113165 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001486_070 0.0928000681 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
10 Hb_004974_010 0.0938315368 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
11 Hb_006478_060 0.0944868022 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
12 Hb_002044_050 0.0945408883 - - -
13 Hb_001140_350 0.0947159062 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
14 Hb_002329_040 0.0947397031 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_004875_030 0.0948959206 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
16 Hb_005143_030 0.0951623071 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
17 Hb_002044_170 0.0951818995 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
18 Hb_067193_010 0.0958561221 - - -
19 Hb_000680_110 0.0964461306 - - Endosomal P24A protein precursor, putative [Ricinus communis]
20 Hb_000622_250 0.0985313393 - - atpob1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001366_210 Hb_001366_210 Hb_005731_090 Hb_005731_090 Hb_001366_210--Hb_005731_090 Hb_030627_060 Hb_030627_060 Hb_001366_210--Hb_030627_060 Hb_007635_030 Hb_007635_030 Hb_001366_210--Hb_007635_030 Hb_000375_130 Hb_000375_130 Hb_001366_210--Hb_000375_130 Hb_001454_280 Hb_001454_280 Hb_001366_210--Hb_001454_280 Hb_002174_020 Hb_002174_020 Hb_001366_210--Hb_002174_020 Hb_005731_090--Hb_002174_020 Hb_004453_110 Hb_004453_110 Hb_005731_090--Hb_004453_110 Hb_008112_030 Hb_008112_030 Hb_005731_090--Hb_008112_030 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_000160_290 Hb_000160_290 Hb_005731_090--Hb_000160_290 Hb_005731_090--Hb_030627_060 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_000446_120 Hb_000446_120 Hb_030627_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_007635_030--Hb_001454_280 Hb_007635_030--Hb_008112_030 Hb_007635_030--Hb_002174_020 Hb_007635_030--Hb_002329_040 Hb_002107_070 Hb_002107_070 Hb_007635_030--Hb_002107_070 Hb_009615_170 Hb_009615_170 Hb_007635_030--Hb_009615_170 Hb_015099_010 Hb_015099_010 Hb_000375_130--Hb_015099_010 Hb_000088_130 Hb_000088_130 Hb_000375_130--Hb_000088_130 Hb_002392_030 Hb_002392_030 Hb_000375_130--Hb_002392_030 Hb_133047_010 Hb_133047_010 Hb_000375_130--Hb_133047_010 Hb_009112_010 Hb_009112_010 Hb_000375_130--Hb_009112_010 Hb_174821_010 Hb_174821_010 Hb_000375_130--Hb_174821_010 Hb_001140_350 Hb_001140_350 Hb_001454_280--Hb_001140_350 Hb_001454_280--Hb_002174_020 Hb_006252_020 Hb_006252_020 Hb_001454_280--Hb_006252_020 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_002174_020--Hb_008112_030 Hb_002174_020--Hb_006252_020 Hb_002174_020--Hb_000160_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.666 109.408 43.1497 117.419 157.632 122.487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.5246 34.8886 54.0564 101.721 58.5394

CAGE analysis