Hb_004875_030

Information

Type -
Description -
Location Contig4875: 54300-61617
Sequence    

Annotation

kegg
ID rcu:RCOM_1687020
description Minor histocompatibility antigen H13, putative
nr
ID XP_012086884.1
description PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
swissprot
ID Q8W469
description Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1
trembl
ID A0A067JZI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20581 PE=4 SV=1
Gene Ontology
ID GO:0016021
description signal peptide peptidase-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45068: 54366-61994 , PASA_asmbl_45069: 55511-55759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004875_030 0.0 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
2 Hb_000345_360 0.0458306753 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
3 Hb_004223_290 0.0534605675 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
4 Hb_000990_090 0.0815444655 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
5 Hb_002044_050 0.0824764028 - - -
6 Hb_001486_070 0.0923928615 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
7 Hb_009529_030 0.0930320443 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
8 Hb_001366_210 0.0948959206 - - cathepsin B, putative [Ricinus communis]
9 Hb_000785_040 0.0951067037 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
10 Hb_030627_060 0.0963837917 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
11 Hb_000362_150 0.0983983122 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
12 Hb_000261_100 0.1005272114 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
13 Hb_041828_010 0.1018014004 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
14 Hb_002391_290 0.1020151632 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
15 Hb_000209_070 0.1021841277 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
16 Hb_005731_090 0.1032258296 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
17 Hb_000780_190 0.1037648435 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
18 Hb_000035_410 0.1043000128 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_000004_030 0.1074744429 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
20 Hb_102269_010 0.1079505569 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]

Gene co-expression network

sample Hb_004875_030 Hb_004875_030 Hb_000345_360 Hb_000345_360 Hb_004875_030--Hb_000345_360 Hb_004223_290 Hb_004223_290 Hb_004875_030--Hb_004223_290 Hb_000990_090 Hb_000990_090 Hb_004875_030--Hb_000990_090 Hb_002044_050 Hb_002044_050 Hb_004875_030--Hb_002044_050 Hb_001486_070 Hb_001486_070 Hb_004875_030--Hb_001486_070 Hb_009529_030 Hb_009529_030 Hb_004875_030--Hb_009529_030 Hb_000345_360--Hb_000990_090 Hb_000345_360--Hb_004223_290 Hb_000345_360--Hb_009529_030 Hb_002391_290 Hb_002391_290 Hb_000345_360--Hb_002391_290 Hb_041828_010 Hb_041828_010 Hb_000345_360--Hb_041828_010 Hb_000035_410 Hb_000035_410 Hb_004223_290--Hb_000035_410 Hb_004223_290--Hb_002044_050 Hb_000785_040 Hb_000785_040 Hb_004223_290--Hb_000785_040 Hb_004223_290--Hb_041828_010 Hb_000990_090--Hb_002391_290 Hb_000990_090--Hb_009529_030 Hb_000990_090--Hb_000785_040 Hb_004545_090 Hb_004545_090 Hb_000990_090--Hb_004545_090 Hb_007426_150 Hb_007426_150 Hb_002044_050--Hb_007426_150 Hb_000209_070 Hb_000209_070 Hb_002044_050--Hb_000209_070 Hb_001366_210 Hb_001366_210 Hb_002044_050--Hb_001366_210 Hb_005731_090 Hb_005731_090 Hb_002044_050--Hb_005731_090 Hb_001486_070--Hb_000345_360 Hb_001486_070--Hb_001366_210 Hb_001486_070--Hb_000990_090 Hb_000139_130 Hb_000139_130 Hb_001486_070--Hb_000139_130 Hb_078477_050 Hb_078477_050 Hb_001486_070--Hb_078477_050 Hb_002273_120 Hb_002273_120 Hb_009529_030--Hb_002273_120 Hb_017295_010 Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.7755 47.4242 23.9085 80.9727 94.2467 97.2352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9356 14.132 33.725 63.5293 60.5249

CAGE analysis