Hb_078477_050

Information

Type transcription factor
Description TF Family: Orphans
Location Contig78477: 27114-30749
Sequence    

Annotation

kegg
ID rcu:RCOM_1579240
description hypothetical protein
nr
ID XP_012090072.1
description PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
swissprot
ID Q9FHH8
description Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2
trembl
ID A0A067JQ78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25976 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cct motif family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58059: 28933-30704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078477_050 0.0 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
2 Hb_008177_030 0.083333583 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001486_070 0.1077498072 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
4 Hb_001140_350 0.1112735724 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
5 Hb_001366_210 0.1156210444 - - cathepsin B, putative [Ricinus communis]
6 Hb_002111_060 0.1219664327 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
7 Hb_080313_010 0.1228664682 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
8 Hb_004974_010 0.123246164 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
9 Hb_000009_480 0.1275747227 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
10 Hb_001454_280 0.1316497405 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
11 Hb_000836_270 0.1330522919 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
12 Hb_003747_010 0.1348384845 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
13 Hb_000376_090 0.1348801404 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
14 Hb_000209_070 0.1379847163 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
15 Hb_000221_120 0.1380247506 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_001675_070 0.138086771 - - eukaryotic translation elongation factor, putative [Ricinus communis]
17 Hb_000088_130 0.1383350014 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
18 Hb_000589_040 0.1389035657 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
19 Hb_000375_130 0.1393084355 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
20 Hb_000645_120 0.1397217446 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]

Gene co-expression network

sample Hb_078477_050 Hb_078477_050 Hb_008177_030 Hb_008177_030 Hb_078477_050--Hb_008177_030 Hb_001486_070 Hb_001486_070 Hb_078477_050--Hb_001486_070 Hb_001140_350 Hb_001140_350 Hb_078477_050--Hb_001140_350 Hb_001366_210 Hb_001366_210 Hb_078477_050--Hb_001366_210 Hb_002111_060 Hb_002111_060 Hb_078477_050--Hb_002111_060 Hb_080313_010 Hb_080313_010 Hb_078477_050--Hb_080313_010 Hb_008143_070 Hb_008143_070 Hb_008177_030--Hb_008143_070 Hb_004974_010 Hb_004974_010 Hb_008177_030--Hb_004974_010 Hb_003747_010 Hb_003747_010 Hb_008177_030--Hb_003747_010 Hb_008177_030--Hb_080313_010 Hb_008177_030--Hb_001140_350 Hb_000345_360 Hb_000345_360 Hb_001486_070--Hb_000345_360 Hb_004875_030 Hb_004875_030 Hb_001486_070--Hb_004875_030 Hb_001486_070--Hb_001366_210 Hb_000990_090 Hb_000990_090 Hb_001486_070--Hb_000990_090 Hb_000139_130 Hb_000139_130 Hb_001486_070--Hb_000139_130 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_000645_120 Hb_000645_120 Hb_001140_350--Hb_000645_120 Hb_001140_350--Hb_080313_010 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130 Hb_005731_090 Hb_005731_090 Hb_001366_210--Hb_005731_090 Hb_030627_060 Hb_030627_060 Hb_001366_210--Hb_030627_060 Hb_007635_030 Hb_007635_030 Hb_001366_210--Hb_007635_030 Hb_000375_130 Hb_000375_130 Hb_001366_210--Hb_000375_130 Hb_001366_210--Hb_001454_280 Hb_002174_020 Hb_002174_020 Hb_001366_210--Hb_002174_020 Hb_002111_060--Hb_000645_120 Hb_009620_050 Hb_009620_050 Hb_002111_060--Hb_009620_050 Hb_003430_060 Hb_003430_060 Hb_002111_060--Hb_003430_060 Hb_000086_200 Hb_000086_200 Hb_002111_060--Hb_000086_200 Hb_000836_270 Hb_000836_270 Hb_002111_060--Hb_000836_270 Hb_012023_020 Hb_012023_020 Hb_080313_010--Hb_012023_020 Hb_005503_040 Hb_005503_040 Hb_080313_010--Hb_005503_040 Hb_063716_080 Hb_063716_080 Hb_080313_010--Hb_063716_080 Hb_080313_010--Hb_003747_010 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7074 11.1704 3.87685 16.5506 15.9171 16.7696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92591 5.1213 5.43996 14.5353 4.38151

CAGE analysis