Hb_008177_030

Information

Type -
Description -
Location Contig8177: 17558-20724
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9SX31
description Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59493: 17677-19659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008177_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_078477_050 0.083333583 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
3 Hb_008143_070 0.1068497544 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
4 Hb_004974_010 0.1086795717 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
5 Hb_003747_010 0.1114943739 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
6 Hb_080313_010 0.1152129947 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
7 Hb_001140_350 0.1192138375 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
8 Hb_000740_110 0.1233251649 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
9 Hb_001034_070 0.1233596564 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_005503_040 0.1276455974 - - PREDICTED: AMP deaminase [Jatropha curcas]
11 Hb_001621_130 0.1293078632 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
12 Hb_001486_070 0.1294628465 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
13 Hb_001492_010 0.1300837122 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
14 Hb_000703_210 0.1309799833 - - Inactive protein kinase [Gossypium arboreum]
15 Hb_002163_010 0.1311648785 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
16 Hb_006355_090 0.1312238897 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
17 Hb_001369_440 0.1314249237 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
18 Hb_000181_250 0.1317665563 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
19 Hb_005143_030 0.1334733753 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
20 Hb_010053_030 0.1338419739 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_008177_030 Hb_008177_030 Hb_078477_050 Hb_078477_050 Hb_008177_030--Hb_078477_050 Hb_008143_070 Hb_008143_070 Hb_008177_030--Hb_008143_070 Hb_004974_010 Hb_004974_010 Hb_008177_030--Hb_004974_010 Hb_003747_010 Hb_003747_010 Hb_008177_030--Hb_003747_010 Hb_080313_010 Hb_080313_010 Hb_008177_030--Hb_080313_010 Hb_001140_350 Hb_001140_350 Hb_008177_030--Hb_001140_350 Hb_001486_070 Hb_001486_070 Hb_078477_050--Hb_001486_070 Hb_078477_050--Hb_001140_350 Hb_001366_210 Hb_001366_210 Hb_078477_050--Hb_001366_210 Hb_002111_060 Hb_002111_060 Hb_078477_050--Hb_002111_060 Hb_078477_050--Hb_080313_010 Hb_001055_030 Hb_001055_030 Hb_008143_070--Hb_001055_030 Hb_000622_250 Hb_000622_250 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_001621_130 Hb_001621_130 Hb_004974_010--Hb_001621_130 Hb_006478_060 Hb_006478_060 Hb_004974_010--Hb_006478_060 Hb_010053_030 Hb_010053_030 Hb_004974_010--Hb_010053_030 Hb_000181_250 Hb_000181_250 Hb_004974_010--Hb_000181_250 Hb_000505_020 Hb_000505_020 Hb_004974_010--Hb_000505_020 Hb_004974_010--Hb_001366_210 Hb_030116_020 Hb_030116_020 Hb_003747_010--Hb_030116_020 Hb_003747_010--Hb_080313_010 Hb_002163_010 Hb_002163_010 Hb_003747_010--Hb_002163_010 Hb_001172_010 Hb_001172_010 Hb_003747_010--Hb_001172_010 Hb_004586_180 Hb_004586_180 Hb_003747_010--Hb_004586_180 Hb_006586_050 Hb_006586_050 Hb_003747_010--Hb_006586_050 Hb_012023_020 Hb_012023_020 Hb_080313_010--Hb_012023_020 Hb_080313_010--Hb_001140_350 Hb_005503_040 Hb_005503_040 Hb_080313_010--Hb_005503_040 Hb_063716_080 Hb_063716_080 Hb_080313_010--Hb_063716_080 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_000645_120 Hb_000645_120 Hb_001140_350--Hb_000645_120 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.0688 25.4044 9.28216 28.6616 24.5845 36.0532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6904 7.85636 9.09553 36.5838 7.93864

CAGE analysis