Hb_008143_070

Information

Type -
Description -
Location Contig8143: 87630-93147
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19220g
description XH/XS domain-containing family protein
nr
ID XP_012092549.1
description PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
swissprot
ID Q9LMH6
description Factor of DNA methylation 4 OS=Arabidopsis thaliana GN=FDM4 PE=4 SV=1
trembl
ID A0A067J9K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05296 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59321: 87733-88983 , PASA_asmbl_59322: 87733-88983 , PASA_asmbl_59323: 89627-90381 , PASA_asmbl_59324: 91518-93135 , PASA_asmbl_59325: 92857-93111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008143_070 0.0 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
2 Hb_001055_030 0.0845970056 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
3 Hb_000622_250 0.0856893097 - - atpob1, putative [Ricinus communis]
4 Hb_005143_030 0.0966898181 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
5 Hb_003498_120 0.1046945497 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
6 Hb_001318_020 0.1047421699 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
7 Hb_004668_060 0.1056199156 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
8 Hb_000139_130 0.1065545267 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
9 Hb_008177_030 0.1068497544 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_030736_070 0.1076836835 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
11 Hb_061878_010 0.1080148012 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
12 Hb_003211_010 0.1085503065 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
13 Hb_001366_210 0.1088352238 - - cathepsin B, putative [Ricinus communis]
14 Hb_000740_110 0.1089234416 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
15 Hb_027760_070 0.1094277035 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
16 Hb_156850_070 0.1112312133 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006355_090 0.1118259917 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
18 Hb_004974_010 0.1127363414 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
19 Hb_001033_050 0.1133395309 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
20 Hb_011716_090 0.1134730728 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_008143_070 Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_008143_070--Hb_001055_030 Hb_000622_250 Hb_000622_250 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_001055_030--Hb_000622_250 Hb_157966_010 Hb_157966_010 Hb_000622_250--Hb_157966_010 Hb_004659_080 Hb_004659_080 Hb_000622_250--Hb_004659_080 Hb_000236_220 Hb_000236_220 Hb_000622_250--Hb_000236_220 Hb_005260_010 Hb_005260_010 Hb_000622_250--Hb_005260_010 Hb_000627_180 Hb_000627_180 Hb_000622_250--Hb_000627_180 Hb_006252_020 Hb_006252_020 Hb_000622_250--Hb_006252_020 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_028487_010 Hb_028487_010 Hb_005143_030--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_005143_030--Hb_001821_090 Hb_005143_030--Hb_003498_120 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_003498_120--Hb_001235_140 Hb_003498_120--Hb_001821_090 Hb_009615_170 Hb_009615_170 Hb_001318_020--Hb_009615_170 Hb_006355_090 Hb_006355_090 Hb_001318_020--Hb_006355_090 Hb_140049_080 Hb_140049_080 Hb_001318_020--Hb_140049_080 Hb_001318_020--Hb_001377_160 Hb_000130_020 Hb_000130_020 Hb_001318_020--Hb_000130_020 Hb_061878_010 Hb_061878_010 Hb_001318_020--Hb_061878_010 Hb_004668_060--Hb_001377_160 Hb_007508_080 Hb_007508_080 Hb_004668_060--Hb_007508_080 Hb_001033_050 Hb_001033_050 Hb_004668_060--Hb_001033_050 Hb_000139_130 Hb_000139_130 Hb_004668_060--Hb_000139_130 Hb_005503_040 Hb_005503_040 Hb_004668_060--Hb_005503_040 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.00647 9.83818 2.5011 7.23823 6.82708 8.15296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03667 1.76915 2.65908 8.04529 2.36636

CAGE analysis