Hb_000627_180

Information

Type -
Description -
Location Contig627: 175373-178730
Sequence    

Annotation

kegg
ID rcu:RCOM_1677780
description hypothetical protein
nr
ID XP_002509538.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LK32
description Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
trembl
ID B9RBK4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51710: 175231-175383 , PASA_asmbl_51711: 175419-178706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000622_250 0.0776542754 - - atpob1, putative [Ricinus communis]
3 Hb_000236_410 0.0922099335 - - Paramyosin, putative [Ricinus communis]
4 Hb_000069_410 0.0955067364 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
5 Hb_002636_180 0.0965457283 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
6 Hb_005214_090 0.0978069881 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
7 Hb_000925_160 0.097840025 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
8 Hb_005260_010 0.1012723701 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
9 Hb_001055_030 0.1025404079 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
10 Hb_156850_070 0.1028242086 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000236_220 0.1035881486 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
12 Hb_157966_010 0.1036801002 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
13 Hb_001575_010 0.1043209089 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000594_040 0.1066000763 - - hypothetical protein L484_013922 [Morus notabilis]
15 Hb_089140_030 0.109564507 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
16 Hb_012799_120 0.1105387439 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
17 Hb_001318_020 0.1107387631 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
18 Hb_093084_070 0.1112368769 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_000574_540 0.1115359394 - - ATP binding protein, putative [Ricinus communis]
20 Hb_003777_160 0.1117586884 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000627_180 Hb_000627_180 Hb_000622_250 Hb_000622_250 Hb_000627_180--Hb_000622_250 Hb_000236_410 Hb_000236_410 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_002636_180 Hb_002636_180 Hb_000627_180--Hb_002636_180 Hb_005214_090 Hb_005214_090 Hb_000627_180--Hb_005214_090 Hb_000925_160 Hb_000925_160 Hb_000627_180--Hb_000925_160 Hb_157966_010 Hb_157966_010 Hb_000622_250--Hb_157966_010 Hb_004659_080 Hb_004659_080 Hb_000622_250--Hb_004659_080 Hb_000236_220 Hb_000236_220 Hb_000622_250--Hb_000236_220 Hb_005260_010 Hb_005260_010 Hb_000622_250--Hb_005260_010 Hb_006252_020 Hb_006252_020 Hb_000622_250--Hb_006252_020 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_001821_090 Hb_001821_090 Hb_000069_410--Hb_001821_090 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_003581_170 Hb_003581_170 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_002890_090 Hb_002890_090 Hb_002636_180--Hb_002890_090 Hb_000345_140 Hb_000345_140 Hb_002636_180--Hb_000345_140 Hb_000976_210 Hb_000976_210 Hb_002636_180--Hb_000976_210 Hb_000330_040 Hb_000330_040 Hb_002636_180--Hb_000330_040 Hb_001967_030 Hb_001967_030 Hb_002636_180--Hb_001967_030 Hb_000820_120 Hb_000820_120 Hb_002636_180--Hb_000820_120 Hb_000856_310 Hb_000856_310 Hb_005214_090--Hb_000856_310 Hb_000244_220 Hb_000244_220 Hb_005214_090--Hb_000244_220 Hb_005214_090--Hb_001575_010 Hb_156850_070 Hb_156850_070 Hb_005214_090--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_005214_090--Hb_089140_030 Hb_000735_160 Hb_000735_160 Hb_000925_160--Hb_000735_160 Hb_000925_160--Hb_144744_010 Hb_000925_160--Hb_000236_410 Hb_001205_030 Hb_001205_030 Hb_000925_160--Hb_001205_030 Hb_000390_100 Hb_000390_100 Hb_000925_160--Hb_000390_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.0335 149.576 26.852 53.7261 96.8537 63.658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.3418 26.7081 48.6261 83.5801 39.1647

CAGE analysis