Hb_156850_070

Information

Type -
Description -
Location Contig156850: 43721-45770
Sequence    

Annotation

kegg
ID rcu:RCOM_1600700
description hypothetical protein
nr
ID XP_002510655.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8L2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1600700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13648: 43826-45068 , PASA_asmbl_13649: 45088-45489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156850_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000622_250 0.0843479679 - - atpob1, putative [Ricinus communis]
3 Hb_000740_110 0.0922429176 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
4 Hb_000976_040 0.0950687447 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
5 Hb_005143_030 0.0959081266 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
6 Hb_005214_090 0.0979323087 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
7 Hb_000627_180 0.1028242086 - - conserved hypothetical protein [Ricinus communis]
8 Hb_093084_070 0.1040343412 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
9 Hb_000959_040 0.1041005806 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
10 Hb_001575_010 0.104932218 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000236_220 0.105973183 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
12 Hb_000244_220 0.1066012861 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
13 Hb_001055_030 0.1068644425 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
14 Hb_000046_010 0.1087053245 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
15 Hb_001912_100 0.1089191916 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
16 Hb_000853_120 0.1090176004 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
17 Hb_000589_040 0.1106356526 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
18 Hb_008143_070 0.1112312133 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
19 Hb_007676_100 0.1132922141 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
20 Hb_000836_270 0.1134595343 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]

Gene co-expression network

sample Hb_156850_070 Hb_156850_070 Hb_000622_250 Hb_000622_250 Hb_156850_070--Hb_000622_250 Hb_000740_110 Hb_000740_110 Hb_156850_070--Hb_000740_110 Hb_000976_040 Hb_000976_040 Hb_156850_070--Hb_000976_040 Hb_005143_030 Hb_005143_030 Hb_156850_070--Hb_005143_030 Hb_005214_090 Hb_005214_090 Hb_156850_070--Hb_005214_090 Hb_000627_180 Hb_000627_180 Hb_156850_070--Hb_000627_180 Hb_157966_010 Hb_157966_010 Hb_000622_250--Hb_157966_010 Hb_004659_080 Hb_004659_080 Hb_000622_250--Hb_004659_080 Hb_000236_220 Hb_000236_220 Hb_000622_250--Hb_000236_220 Hb_005260_010 Hb_005260_010 Hb_000622_250--Hb_005260_010 Hb_000622_250--Hb_000627_180 Hb_006252_020 Hb_006252_020 Hb_000622_250--Hb_006252_020 Hb_089140_030 Hb_089140_030 Hb_000740_110--Hb_089140_030 Hb_000740_110--Hb_000976_040 Hb_008143_070 Hb_008143_070 Hb_000740_110--Hb_008143_070 Hb_006588_150 Hb_006588_150 Hb_000740_110--Hb_006588_150 Hb_000740_110--Hb_005214_090 Hb_000853_120 Hb_000853_120 Hb_000976_040--Hb_000853_120 Hb_000200_280 Hb_000200_280 Hb_000976_040--Hb_000200_280 Hb_011512_090 Hb_011512_090 Hb_000976_040--Hb_011512_090 Hb_000640_130 Hb_000640_130 Hb_000976_040--Hb_000640_130 Hb_000976_040--Hb_005143_030 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_028487_010 Hb_028487_010 Hb_005143_030--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_005143_030--Hb_001821_090 Hb_003498_120 Hb_003498_120 Hb_005143_030--Hb_003498_120 Hb_000856_310 Hb_000856_310 Hb_005214_090--Hb_000856_310 Hb_000244_220 Hb_000244_220 Hb_005214_090--Hb_000244_220 Hb_005214_090--Hb_001575_010 Hb_005214_090--Hb_000627_180 Hb_005214_090--Hb_089140_030 Hb_000236_410 Hb_000236_410 Hb_000627_180--Hb_000236_410 Hb_000069_410 Hb_000069_410 Hb_000627_180--Hb_000069_410 Hb_002636_180 Hb_002636_180 Hb_000627_180--Hb_002636_180 Hb_000925_160 Hb_000925_160 Hb_000627_180--Hb_000925_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8899 45.7544 4.74495 21.9767 36.8576 32.6675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2935 15.3919 15.7671 30.3385 10.5181

CAGE analysis