Hb_000853_120

Information

Type -
Description -
Location Contig853: 78492-81746
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20260g
description POPTRDRAFT_830447; ethylene receptor family protein
nr
ID XP_012082824.1
description PREDICTED: ethylene response sensor 1 [Jatropha curcas]
swissprot
ID Q38846
description Ethylene response sensor 1 OS=Arabidopsis thaliana GN=ERS1 PE=1 SV=1
trembl
ID A0A067JWH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13973 PE=4 SV=1
Gene Ontology
ID GO:0005789
description ethylene response sensor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60470: 78586-82631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_120 0.0 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
2 Hb_000976_040 0.0801972594 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
3 Hb_002110_030 0.1079179169 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
4 Hb_156850_070 0.1090176004 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000836_270 0.1103750453 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
6 Hb_000244_220 0.1119515509 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
7 Hb_009701_010 0.1139636901 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
8 Hb_011512_090 0.1166104682 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
9 Hb_002400_310 0.1189724427 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
10 Hb_000046_010 0.1219210094 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
11 Hb_000086_580 0.123657545 - - ring finger protein, putative [Ricinus communis]
12 Hb_093084_070 0.1263859923 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
13 Hb_000200_280 0.1274928659 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
14 Hb_000740_110 0.1278797486 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
15 Hb_002163_010 0.1279056561 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
16 Hb_000140_480 0.1284486112 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
17 Hb_000330_040 0.1287121358 - - PREDICTED: protein RER1B-like [Jatropha curcas]
18 Hb_009564_030 0.128911801 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
19 Hb_000369_130 0.1289293775 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
20 Hb_000088_130 0.1292564036 - - hypothetical protein JCGZ_02447 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_120 Hb_000853_120 Hb_000976_040 Hb_000976_040 Hb_000853_120--Hb_000976_040 Hb_002110_030 Hb_002110_030 Hb_000853_120--Hb_002110_030 Hb_156850_070 Hb_156850_070 Hb_000853_120--Hb_156850_070 Hb_000836_270 Hb_000836_270 Hb_000853_120--Hb_000836_270 Hb_000244_220 Hb_000244_220 Hb_000853_120--Hb_000244_220 Hb_009701_010 Hb_009701_010 Hb_000853_120--Hb_009701_010 Hb_000200_280 Hb_000200_280 Hb_000976_040--Hb_000200_280 Hb_011512_090 Hb_011512_090 Hb_000976_040--Hb_011512_090 Hb_000976_040--Hb_156850_070 Hb_000640_130 Hb_000640_130 Hb_000976_040--Hb_000640_130 Hb_005143_030 Hb_005143_030 Hb_000976_040--Hb_005143_030 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_001019_180 Hb_001019_180 Hb_002110_030--Hb_001019_180 Hb_073562_010 Hb_073562_010 Hb_002110_030--Hb_073562_010 Hb_000330_040 Hb_000330_040 Hb_002110_030--Hb_000330_040 Hb_002110_030--Hb_011512_090 Hb_001575_010 Hb_001575_010 Hb_002110_030--Hb_001575_010 Hb_000622_250 Hb_000622_250 Hb_156850_070--Hb_000622_250 Hb_000740_110 Hb_000740_110 Hb_156850_070--Hb_000740_110 Hb_156850_070--Hb_005143_030 Hb_005214_090 Hb_005214_090 Hb_156850_070--Hb_005214_090 Hb_000627_180 Hb_000627_180 Hb_156850_070--Hb_000627_180 Hb_000645_120 Hb_000645_120 Hb_000836_270--Hb_000645_120 Hb_001140_350 Hb_001140_350 Hb_000836_270--Hb_001140_350 Hb_000510_310 Hb_000510_310 Hb_000836_270--Hb_000510_310 Hb_000215_190 Hb_000215_190 Hb_000836_270--Hb_000215_190 Hb_001454_280 Hb_001454_280 Hb_000836_270--Hb_001454_280 Hb_005321_020 Hb_005321_020 Hb_000836_270--Hb_005321_020 Hb_000856_310 Hb_000856_310 Hb_000244_220--Hb_000856_310 Hb_004602_040 Hb_004602_040 Hb_000244_220--Hb_004602_040 Hb_000046_010 Hb_000046_010 Hb_000244_220--Hb_000046_010 Hb_001912_100 Hb_001912_100 Hb_000244_220--Hb_001912_100 Hb_002163_010 Hb_002163_010 Hb_000244_220--Hb_002163_010 Hb_000327_340 Hb_000327_340 Hb_000244_220--Hb_000327_340 Hb_002007_240 Hb_002007_240 Hb_009701_010--Hb_002007_240 Hb_004705_140 Hb_004705_140 Hb_009701_010--Hb_004705_140 Hb_011311_020 Hb_011311_020 Hb_009701_010--Hb_011311_020 Hb_000227_240 Hb_000227_240 Hb_009701_010--Hb_000227_240 Hb_009564_030 Hb_009564_030 Hb_009701_010--Hb_009564_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.5637 63.0474 13.2395 26.6349 53.4305 41.0619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9279 26.4209 32.8548 63.8239 8.78341

CAGE analysis