Hb_073562_010

Information

Type -
Description -
Location Contig73562: 6-3715
Sequence    

Annotation

kegg
ID pop:POPTR_0011s036602
description hypothetical protein
nr
ID XP_006377277.1
description hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FY67
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s036602g PE=4 SV=1
Gene Ontology
ID GO:0000166
description b-raf proto-oncogene serine threonine-protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073562_010 0.0 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
2 Hb_000330_040 0.0797637039 - - PREDICTED: protein RER1B-like [Jatropha curcas]
3 Hb_003020_050 0.0847838511 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002110_030 0.090532315 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
5 Hb_008775_040 0.0963105531 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
6 Hb_001019_180 0.0997852969 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
7 Hb_002701_040 0.1046420491 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
8 Hb_000264_320 0.1082893043 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
9 Hb_011311_020 0.109265183 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
10 Hb_001956_200 0.1108146478 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
11 Hb_000140_230 0.1116510093 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
12 Hb_006831_040 0.1134660568 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
13 Hb_010174_110 0.1159099044 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
14 Hb_000130_040 0.119649451 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
15 Hb_000012_260 0.1199986006 - - Far upstream element-binding 2 [Gossypium arboreum]
16 Hb_168697_010 0.1207341212 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
17 Hb_004117_310 0.1213101828 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
18 Hb_000175_220 0.121856371 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
19 Hb_172632_110 0.1223820227 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
20 Hb_000575_120 0.1223906233 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]

Gene co-expression network

sample Hb_073562_010 Hb_073562_010 Hb_000330_040 Hb_000330_040 Hb_073562_010--Hb_000330_040 Hb_003020_050 Hb_003020_050 Hb_073562_010--Hb_003020_050 Hb_002110_030 Hb_002110_030 Hb_073562_010--Hb_002110_030 Hb_008775_040 Hb_008775_040 Hb_073562_010--Hb_008775_040 Hb_001019_180 Hb_001019_180 Hb_073562_010--Hb_001019_180 Hb_002701_040 Hb_002701_040 Hb_073562_010--Hb_002701_040 Hb_000330_040--Hb_001019_180 Hb_000976_210 Hb_000976_210 Hb_000330_040--Hb_000976_210 Hb_000330_040--Hb_008775_040 Hb_002636_180 Hb_002636_180 Hb_000330_040--Hb_002636_180 Hb_000345_140 Hb_000345_140 Hb_000330_040--Hb_000345_140 Hb_000264_320 Hb_000264_320 Hb_003020_050--Hb_000264_320 Hb_000140_230 Hb_000140_230 Hb_003020_050--Hb_000140_230 Hb_003020_050--Hb_008775_040 Hb_001956_200 Hb_001956_200 Hb_003020_050--Hb_001956_200 Hb_168697_010 Hb_168697_010 Hb_003020_050--Hb_168697_010 Hb_006831_040 Hb_006831_040 Hb_002110_030--Hb_006831_040 Hb_002110_030--Hb_001019_180 Hb_002110_030--Hb_000330_040 Hb_011512_090 Hb_011512_090 Hb_002110_030--Hb_011512_090 Hb_001575_010 Hb_001575_010 Hb_002110_030--Hb_001575_010 Hb_008775_040--Hb_000264_320 Hb_000175_220 Hb_000175_220 Hb_008775_040--Hb_000175_220 Hb_002636_100 Hb_002636_100 Hb_008775_040--Hb_002636_100 Hb_008775_040--Hb_000140_230 Hb_012799_120 Hb_012799_120 Hb_001019_180--Hb_012799_120 Hb_002890_090 Hb_002890_090 Hb_001019_180--Hb_002890_090 Hb_023226_080 Hb_023226_080 Hb_001019_180--Hb_023226_080 Hb_002006_040 Hb_002006_040 Hb_001019_180--Hb_002006_040 Hb_001967_030 Hb_001967_030 Hb_002701_040--Hb_001967_030 Hb_006637_050 Hb_006637_050 Hb_002701_040--Hb_006637_050 Hb_130192_030 Hb_130192_030 Hb_002701_040--Hb_130192_030 Hb_004032_380 Hb_004032_380 Hb_002701_040--Hb_004032_380 Hb_000130_040 Hb_000130_040 Hb_002701_040--Hb_000130_040 Hb_003906_160 Hb_003906_160 Hb_002701_040--Hb_003906_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.469508 1.02706 0.281114 0.253381 0.712094 0.628018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.277513 0.409448 0.937002 0.959182 0.348265

CAGE analysis