Hb_000175_220

Information

Type -
Description -
Location Contig175: 135237-136790
Sequence    

Annotation

kegg
ID pmum:103325186
description pentatricopeptide repeat-containing protein At4g21065
nr
ID XP_012073171.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
swissprot
ID A8MQA3
description Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
trembl
ID A0A067KPZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06134 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_220 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
2 Hb_008775_040 0.0611745566 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
3 Hb_000264_320 0.0778541135 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
4 Hb_004767_050 0.0844341086 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
5 Hb_002636_100 0.0867319336 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
6 Hb_001123_290 0.0910485705 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
7 Hb_001828_130 0.0948403531 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
8 Hb_002007_160 0.0957291361 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
9 Hb_000322_150 0.0961486001 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
10 Hb_048219_010 0.099830907 - - coronatine-insensitive 1 [Hevea brasiliensis]
11 Hb_002043_140 0.0999557931 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
12 Hb_010172_090 0.1019861628 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000330_040 0.1041061412 - - PREDICTED: protein RER1B-like [Jatropha curcas]
14 Hb_001268_380 0.1051834875 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
15 Hb_011491_010 0.1052646241 - - Protein YME1, putative [Ricinus communis]
16 Hb_000140_230 0.1052700414 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
17 Hb_011512_120 0.1055872858 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
18 Hb_000866_120 0.1064339233 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
19 Hb_002701_040 0.1068639974 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
20 Hb_029142_050 0.1073540072 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_220 Hb_000175_220 Hb_008775_040 Hb_008775_040 Hb_000175_220--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_000175_220--Hb_000264_320 Hb_004767_050 Hb_004767_050 Hb_000175_220--Hb_004767_050 Hb_002636_100 Hb_002636_100 Hb_000175_220--Hb_002636_100 Hb_001123_290 Hb_001123_290 Hb_000175_220--Hb_001123_290 Hb_001828_130 Hb_001828_130 Hb_000175_220--Hb_001828_130 Hb_008775_040--Hb_000264_320 Hb_008775_040--Hb_002636_100 Hb_003020_050 Hb_003020_050 Hb_008775_040--Hb_003020_050 Hb_000140_230 Hb_000140_230 Hb_008775_040--Hb_000140_230 Hb_000330_040 Hb_000330_040 Hb_008775_040--Hb_000330_040 Hb_000264_320--Hb_002636_100 Hb_000264_320--Hb_003020_050 Hb_000264_320--Hb_000140_230 Hb_015807_070 Hb_015807_070 Hb_000264_320--Hb_015807_070 Hb_048219_010 Hb_048219_010 Hb_004767_050--Hb_048219_010 Hb_001818_070 Hb_001818_070 Hb_004767_050--Hb_001818_070 Hb_000592_090 Hb_000592_090 Hb_004767_050--Hb_000592_090 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_011491_010 Hb_011491_010 Hb_004767_050--Hb_011491_010 Hb_140506_010 Hb_140506_010 Hb_004767_050--Hb_140506_010 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_002798_070 Hb_002798_070 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_116086_010 Hb_116086_010 Hb_001123_290--Hb_116086_010 Hb_001123_290--Hb_000322_150 Hb_000832_030 Hb_000832_030 Hb_001123_290--Hb_000832_030 Hb_001864_060 Hb_001864_060 Hb_001123_290--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_001123_290--Hb_002005_110 Hb_001828_130--Hb_011491_010 Hb_001828_130--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_001828_130--Hb_000243_250 Hb_001828_130--Hb_000322_150 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39758 2.80053 0.55429 0.713783 1.04471 1.45171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.569738 1.41548 1.64215 1.39302 0.939094

CAGE analysis