Hb_116086_010

Information

Type -
Description -
Location Contig116086: 7396-9884
Sequence    

Annotation

kegg
ID rcu:RCOM_1330180
description leucine-rich repeat-containing protein, putative
nr
ID KDP31604.1
description hypothetical protein JCGZ_14829 [Jatropha curcas]
swissprot
ID P0DKH6
description Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1
trembl
ID A0A067KID9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14829 PE=4 SV=1
Gene Ontology
ID GO:0032550
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04933: 6651-7454 , PASA_asmbl_04935: 7877-8360 , PASA_asmbl_04936: 8480-8601 , PASA_asmbl_04937: 8648-9884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116086_010 0.0 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
2 Hb_001123_290 0.0791996301 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
3 Hb_000832_030 0.0798868749 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
4 Hb_001864_060 0.0811692418 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_002005_110 0.0816278885 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
6 Hb_003411_110 0.0919797842 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
7 Hb_155396_010 0.0954325452 - - TMV resistance protein N, putative [Ricinus communis]
8 Hb_001828_130 0.1003776106 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
9 Hb_003055_060 0.1009171337 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
10 Hb_001268_390 0.1014772071 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
11 Hb_003752_100 0.1025659511 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
12 Hb_004440_040 0.1042038429 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000140_070 0.1054643349 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
14 Hb_004109_030 0.1057952287 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003175_030 0.1058496879 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
16 Hb_003373_040 0.1103122808 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
17 Hb_000025_330 0.1119572914 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
18 Hb_000322_150 0.1133774337 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
19 Hb_002046_020 0.1148031992 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
20 Hb_093084_070 0.1149751941 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]

Gene co-expression network

sample Hb_116086_010 Hb_116086_010 Hb_001123_290 Hb_001123_290 Hb_116086_010--Hb_001123_290 Hb_000832_030 Hb_000832_030 Hb_116086_010--Hb_000832_030 Hb_001864_060 Hb_001864_060 Hb_116086_010--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_116086_010--Hb_002005_110 Hb_003411_110 Hb_003411_110 Hb_116086_010--Hb_003411_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010 Hb_000175_220 Hb_000175_220 Hb_001123_290--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_001123_290--Hb_000322_150 Hb_001123_290--Hb_000832_030 Hb_001123_290--Hb_001864_060 Hb_001123_290--Hb_002005_110 Hb_000832_030--Hb_003411_110 Hb_000334_220 Hb_000334_220 Hb_000832_030--Hb_000334_220 Hb_003373_040 Hb_003373_040 Hb_000832_030--Hb_003373_040 Hb_093084_070 Hb_093084_070 Hb_000832_030--Hb_093084_070 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_001828_130 Hb_001828_130 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_003768_050 Hb_003768_050 Hb_002005_110--Hb_003768_050 Hb_013399_070 Hb_013399_070 Hb_002005_110--Hb_013399_070 Hb_002005_110--Hb_001864_060 Hb_001080_230 Hb_001080_230 Hb_002005_110--Hb_001080_230 Hb_002005_110--Hb_001828_130 Hb_011930_110 Hb_011930_110 Hb_003411_110--Hb_011930_110 Hb_003411_110--Hb_000334_220 Hb_000084_030 Hb_000084_030 Hb_003411_110--Hb_000084_030 Hb_002284_280 Hb_002284_280 Hb_003411_110--Hb_002284_280 Hb_155396_010--Hb_003373_040 Hb_155396_010--Hb_004109_030 Hb_005725_060 Hb_005725_060 Hb_155396_010--Hb_005725_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.85558 13.7109 3.24251 4.00229 3.1343 6.46387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83196 3.80051 5.02381 3.30724 2.98398

CAGE analysis