Hb_003411_110

Information

Type -
Description -
Location Contig3411: 158115-162676
Sequence    

Annotation

kegg
ID rcu:RCOM_0353100
description DNA binding protein, putative
nr
ID XP_012082076.1
description PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18314 PE=4 SV=1
Gene Ontology
ID GO:0003682
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35664: 158804-159204 , PASA_asmbl_35665: 160647-160895 , PASA_asmbl_35666: 161305-162407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_110 0.0 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
2 Hb_000832_030 0.0772518084 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
3 Hb_116086_010 0.0919797842 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
4 Hb_011930_110 0.1011754115 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
5 Hb_000334_220 0.1025619729 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
6 Hb_000084_030 0.102719707 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002284_280 0.107961404 transcription factor TF Family: HMG high mobility group protein [Hevea brasiliensis]
8 Hb_155396_010 0.1081258822 - - TMV resistance protein N, putative [Ricinus communis]
9 Hb_004440_040 0.1109910177 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000103_100 0.1155627501 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
11 Hb_003373_040 0.116488145 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
12 Hb_010738_010 0.1165807674 - - PREDICTED: B2 protein [Jatropha curcas]
13 Hb_009780_100 0.1186497091 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
14 Hb_001864_060 0.1199086134 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
15 Hb_000061_490 0.1204779184 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
16 Hb_004597_010 0.1211815459 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
17 Hb_001728_050 0.1219321407 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
18 Hb_004109_030 0.1226786971 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000336_250 0.1265995327 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
20 Hb_004357_020 0.1270411518 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]

Gene co-expression network

sample Hb_003411_110 Hb_003411_110 Hb_000832_030 Hb_000832_030 Hb_003411_110--Hb_000832_030 Hb_116086_010 Hb_116086_010 Hb_003411_110--Hb_116086_010 Hb_011930_110 Hb_011930_110 Hb_003411_110--Hb_011930_110 Hb_000334_220 Hb_000334_220 Hb_003411_110--Hb_000334_220 Hb_000084_030 Hb_000084_030 Hb_003411_110--Hb_000084_030 Hb_002284_280 Hb_002284_280 Hb_003411_110--Hb_002284_280 Hb_000832_030--Hb_116086_010 Hb_000832_030--Hb_000334_220 Hb_003373_040 Hb_003373_040 Hb_000832_030--Hb_003373_040 Hb_093084_070 Hb_093084_070 Hb_000832_030--Hb_093084_070 Hb_001123_290 Hb_001123_290 Hb_000832_030--Hb_001123_290 Hb_116086_010--Hb_001123_290 Hb_001864_060 Hb_001864_060 Hb_116086_010--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_116086_010--Hb_002005_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010 Hb_004440_040 Hb_004440_040 Hb_011930_110--Hb_004440_040 Hb_002263_040 Hb_002263_040 Hb_011930_110--Hb_002263_040 Hb_001754_030 Hb_001754_030 Hb_011930_110--Hb_001754_030 Hb_001728_050 Hb_001728_050 Hb_011930_110--Hb_001728_050 Hb_000103_100 Hb_000103_100 Hb_011930_110--Hb_000103_100 Hb_000803_070 Hb_000803_070 Hb_011930_110--Hb_000803_070 Hb_005016_160 Hb_005016_160 Hb_000334_220--Hb_005016_160 Hb_005541_010 Hb_005541_010 Hb_000334_220--Hb_005541_010 Hb_003052_140 Hb_003052_140 Hb_000334_220--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_000334_220--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_000334_220--Hb_000336_250 Hb_000479_220 Hb_000479_220 Hb_000334_220--Hb_000479_220 Hb_002411_030 Hb_002411_030 Hb_000084_030--Hb_002411_030 Hb_006346_040 Hb_006346_040 Hb_000084_030--Hb_006346_040 Hb_003299_030 Hb_003299_030 Hb_000084_030--Hb_003299_030 Hb_000457_050 Hb_000457_050 Hb_000084_030--Hb_000457_050 Hb_001477_070 Hb_001477_070 Hb_000084_030--Hb_001477_070 Hb_134951_010 Hb_134951_010 Hb_002284_280--Hb_134951_010 Hb_005675_040 Hb_005675_040 Hb_002284_280--Hb_005675_040 Hb_002284_280--Hb_003052_140 Hb_010738_010 Hb_010738_010 Hb_002284_280--Hb_010738_010 Hb_000796_180 Hb_000796_180 Hb_002284_280--Hb_000796_180 Hb_003609_030 Hb_003609_030 Hb_002284_280--Hb_003609_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.96527 11.5355 4.49964 4.02393 3.36665 6.74318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09794 3.54399 4.85501 2.11101 2.88832

CAGE analysis