Hb_000084_030

Information

Type -
Description -
Location Contig84: 36994-41916
Sequence    

Annotation

kegg
ID rcu:RCOM_0143500
description hypothetical protein
nr
ID XP_002534114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q2KIJ2
description Histidine protein methyltransferase 1 homolog OS=Bos taurus GN=METTL18 PE=2 SV=1
trembl
ID B9T795
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0143500 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60033: 37002-41887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002411_030 0.1000604963 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
3 Hb_006346_040 0.1010525721 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
4 Hb_003411_110 0.102719707 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
5 Hb_003299_030 0.1047642072 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
6 Hb_000457_050 0.1057779477 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
7 Hb_001477_070 0.1059245482 - - conserved hypothetical protein [Ricinus communis]
8 Hb_052764_050 0.1061948944 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
9 Hb_010738_010 0.1084382289 - - PREDICTED: B2 protein [Jatropha curcas]
10 Hb_001864_060 0.1104942558 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
11 Hb_002284_280 0.1105800507 transcription factor TF Family: HMG high mobility group protein [Hevea brasiliensis]
12 Hb_005675_040 0.1147686285 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
13 Hb_000256_140 0.1159523446 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
14 Hb_004109_040 0.1164148638 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
15 Hb_011930_110 0.1169331912 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
16 Hb_000179_070 0.1172477794 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
17 Hb_002272_020 0.1177288936 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
18 Hb_003106_040 0.1188494773 - - lipase, putative [Ricinus communis]
19 Hb_111198_010 0.1206067722 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
20 Hb_000407_040 0.1208376923 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000084_030 Hb_000084_030 Hb_002411_030 Hb_002411_030 Hb_000084_030--Hb_002411_030 Hb_006346_040 Hb_006346_040 Hb_000084_030--Hb_006346_040 Hb_003411_110 Hb_003411_110 Hb_000084_030--Hb_003411_110 Hb_003299_030 Hb_003299_030 Hb_000084_030--Hb_003299_030 Hb_000457_050 Hb_000457_050 Hb_000084_030--Hb_000457_050 Hb_001477_070 Hb_001477_070 Hb_000084_030--Hb_001477_070 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005137_050 Hb_005137_050 Hb_002411_030--Hb_005137_050 Hb_005541_010 Hb_005541_010 Hb_002411_030--Hb_005541_010 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_000130_240 Hb_000130_240 Hb_002411_030--Hb_000130_240 Hb_005675_040 Hb_005675_040 Hb_002411_030--Hb_005675_040 Hb_000283_130 Hb_000283_130 Hb_006346_040--Hb_000283_130 Hb_001171_070 Hb_001171_070 Hb_006346_040--Hb_001171_070 Hb_005883_010 Hb_005883_010 Hb_006346_040--Hb_005883_010 Hb_007403_050 Hb_007403_050 Hb_006346_040--Hb_007403_050 Hb_006346_040--Hb_000457_050 Hb_000832_030 Hb_000832_030 Hb_003411_110--Hb_000832_030 Hb_116086_010 Hb_116086_010 Hb_003411_110--Hb_116086_010 Hb_011930_110 Hb_011930_110 Hb_003411_110--Hb_011930_110 Hb_000334_220 Hb_000334_220 Hb_003411_110--Hb_000334_220 Hb_002284_280 Hb_002284_280 Hb_003411_110--Hb_002284_280 Hb_002043_090 Hb_002043_090 Hb_003299_030--Hb_002043_090 Hb_003299_030--Hb_000457_050 Hb_008511_030 Hb_008511_030 Hb_003299_030--Hb_008511_030 Hb_002272_020 Hb_002272_020 Hb_003299_030--Hb_002272_020 Hb_111198_010 Hb_111198_010 Hb_003299_030--Hb_111198_010 Hb_003086_190 Hb_003086_190 Hb_003299_030--Hb_003086_190 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_000457_050--Hb_008511_030 Hb_000457_050--Hb_000283_130 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_008695_090 Hb_008695_090 Hb_001477_070--Hb_008695_090 Hb_000407_040 Hb_000407_040 Hb_001477_070--Hb_000407_040 Hb_008103_110 Hb_008103_110 Hb_001477_070--Hb_008103_110 Hb_002681_060 Hb_002681_060 Hb_001477_070--Hb_002681_060 Hb_014361_150 Hb_014361_150 Hb_001477_070--Hb_014361_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.0275 54.1075 26.4054 12.7768 20.2497 29.6515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0126 24.5858 23.0446 10.1232 6.45235

CAGE analysis