Hb_000407_040

Information

Type transcription factor
Description TF Family: C3H
Location Contig407: 129002-135183
Sequence    

Annotation

kegg
ID rcu:RCOM_0512220
description zinc finger protein, putative
nr
ID XP_002528968.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q94AD9
description Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1
trembl
ID B9SSJ9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0512220 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40321: 130630-131540 , PASA_asmbl_40322: 129053-135052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000407_040 0.0 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
2 Hb_002681_060 0.08285289 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
3 Hb_000010_240 0.0844646835 - - Protein bem46, putative [Ricinus communis]
4 Hb_000059_340 0.0846636211 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
5 Hb_000061_470 0.0894686409 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
6 Hb_001477_070 0.1093396716 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008103_110 0.1105914249 - - ATP binding protein, putative [Ricinus communis]
8 Hb_005137_050 0.1113734914 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
9 Hb_004800_250 0.1148854158 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
10 Hb_001247_130 0.1160872115 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
11 Hb_000878_070 0.1203888919 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
12 Hb_000084_030 0.1208376923 - - conserved hypothetical protein [Ricinus communis]
13 Hb_185516_010 0.122030429 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_001195_040 0.1266581922 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
15 Hb_002675_260 0.12701561 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
16 Hb_006261_090 0.1277212504 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
17 Hb_001828_200 0.1277915329 - - ribosomal protein L13 [Populus trichocarpa]
18 Hb_027073_030 0.1285818877 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
19 Hb_004586_140 0.1293226026 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
20 Hb_000926_310 0.1301246047 - - uncharacterized protein LOC100500241 [Glycine max]

Gene co-expression network

sample Hb_000407_040 Hb_000407_040 Hb_002681_060 Hb_002681_060 Hb_000407_040--Hb_002681_060 Hb_000010_240 Hb_000010_240 Hb_000407_040--Hb_000010_240 Hb_000059_340 Hb_000059_340 Hb_000407_040--Hb_000059_340 Hb_000061_470 Hb_000061_470 Hb_000407_040--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_000407_040--Hb_001477_070 Hb_008103_110 Hb_008103_110 Hb_000407_040--Hb_008103_110 Hb_000130_380 Hb_000130_380 Hb_002681_060--Hb_000130_380 Hb_002681_060--Hb_000061_470 Hb_002681_060--Hb_001477_070 Hb_002681_060--Hb_000059_340 Hb_002681_060--Hb_000010_240 Hb_005488_140 Hb_005488_140 Hb_000010_240--Hb_005488_140 Hb_004800_250 Hb_004800_250 Hb_000010_240--Hb_004800_250 Hb_000010_240--Hb_000059_340 Hb_000010_240--Hb_000061_470 Hb_000983_090 Hb_000983_090 Hb_000010_240--Hb_000983_090 Hb_006261_090 Hb_006261_090 Hb_000059_340--Hb_006261_090 Hb_000059_340--Hb_000061_470 Hb_000866_280 Hb_000866_280 Hb_000059_340--Hb_000866_280 Hb_004586_140 Hb_004586_140 Hb_000061_470--Hb_004586_140 Hb_005137_050 Hb_005137_050 Hb_000061_470--Hb_005137_050 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_000084_030 Hb_000084_030 Hb_001477_070--Hb_000084_030 Hb_008695_090 Hb_008695_090 Hb_001477_070--Hb_008695_090 Hb_001477_070--Hb_008103_110 Hb_014361_150 Hb_014361_150 Hb_001477_070--Hb_014361_150 Hb_000886_050 Hb_000886_050 Hb_008103_110--Hb_000886_050 Hb_008103_110--Hb_000878_070 Hb_001225_030 Hb_001225_030 Hb_008103_110--Hb_001225_030 Hb_000803_070 Hb_000803_070 Hb_008103_110--Hb_000803_070 Hb_006588_210 Hb_006588_210 Hb_008103_110--Hb_006588_210 Hb_008103_110--Hb_005137_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.2405 36.7041 40.9496 13.3696 21.0245 18.2538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1919 23.659 20.8606 12.176 5.09951

CAGE analysis