Hb_000130_380

Information

Type -
Description -
Location Contig130: 325524-332138
Sequence    

Annotation

kegg
ID cic:CICLE_v10007809mg
description hypothetical protein
nr
ID XP_012074212.1
description PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
swissprot
ID Q99385
description Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1
trembl
ID A0A067KJ86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09836 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar calcium ion transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08931: 325288-331898 , PASA_asmbl_08933: 331321-331898 , PASA_asmbl_08934: 330618-330870
cDNA
(Sanger)
(ID:Location)		 013_N20.ab1: 329165-331898 , 053_D10.ab1: 329186-331898

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_380 0.0 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
2 Hb_000661_140 0.1010438659 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
3 Hb_002681_060 0.104290329 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
4 Hb_004109_040 0.1164713494 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
5 Hb_002639_150 0.1172248034 - - -
6 Hb_000085_240 0.1173514636 - - fimbrin, putative [Ricinus communis]
7 Hb_000710_020 0.1206146871 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
8 Hb_000359_020 0.1220521083 - - amine oxidase, putative [Ricinus communis]
9 Hb_002192_080 0.1238516025 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
10 Hb_000926_310 0.1240765149 - - uncharacterized protein LOC100500241 [Glycine max]
11 Hb_002620_010 0.1261725162 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
12 Hb_000477_030 0.1268466214 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
13 Hb_001439_150 0.1293583457 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
14 Hb_106552_050 0.129408125 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
15 Hb_000853_430 0.129474033 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
16 Hb_012389_020 0.1301221576 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
17 Hb_003029_030 0.1303242402 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
18 Hb_001357_090 0.130558472 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
19 Hb_020367_050 0.1308359607 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
20 Hb_009252_100 0.1310510931 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000130_380 Hb_000130_380 Hb_000661_140 Hb_000661_140 Hb_000130_380--Hb_000661_140 Hb_002681_060 Hb_002681_060 Hb_000130_380--Hb_002681_060 Hb_004109_040 Hb_004109_040 Hb_000130_380--Hb_004109_040 Hb_002639_150 Hb_002639_150 Hb_000130_380--Hb_002639_150 Hb_000085_240 Hb_000085_240 Hb_000130_380--Hb_000085_240 Hb_000710_020 Hb_000710_020 Hb_000130_380--Hb_000710_020 Hb_000661_140--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000661_140--Hb_000926_310 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_005288_150 Hb_005288_150 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_000407_040 Hb_000407_040 Hb_002681_060--Hb_000407_040 Hb_000061_470 Hb_000061_470 Hb_002681_060--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_002681_060--Hb_001477_070 Hb_000059_340 Hb_000059_340 Hb_002681_060--Hb_000059_340 Hb_000010_240 Hb_000010_240 Hb_002681_060--Hb_000010_240 Hb_002411_030 Hb_002411_030 Hb_004109_040--Hb_002411_030 Hb_000983_090 Hb_000983_090 Hb_004109_040--Hb_000983_090 Hb_000856_190 Hb_000856_190 Hb_004109_040--Hb_000856_190 Hb_007813_040 Hb_007813_040 Hb_004109_040--Hb_007813_040 Hb_029799_010 Hb_029799_010 Hb_004109_040--Hb_029799_010 Hb_000010_400 Hb_000010_400 Hb_004109_040--Hb_000010_400 Hb_002639_150--Hb_000926_310 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_002639_150--Hb_020367_050 Hb_000666_110 Hb_000666_110 Hb_000085_240--Hb_000666_110 Hb_007164_020 Hb_007164_020 Hb_000085_240--Hb_007164_020 Hb_001504_150 Hb_001504_150 Hb_000085_240--Hb_001504_150 Hb_000621_080 Hb_000621_080 Hb_000085_240--Hb_000621_080 Hb_019962_030 Hb_019962_030 Hb_000085_240--Hb_019962_030 Hb_001439_150 Hb_001439_150 Hb_000085_240--Hb_001439_150 Hb_000710_020--Hb_001439_150 Hb_006185_050 Hb_006185_050 Hb_000710_020--Hb_006185_050 Hb_003464_050 Hb_003464_050 Hb_000710_020--Hb_003464_050 Hb_001305_010 Hb_001305_010 Hb_000710_020--Hb_001305_010 Hb_003175_010 Hb_003175_010 Hb_000710_020--Hb_003175_010 Hb_007951_060 Hb_007951_060 Hb_000710_020--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.6414 74.5636 120.284 33.7135 105.797 107.224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.4772 66.3515 88.1876 25.7331 13.8087

CAGE analysis