Hb_000710_020

Information

Type -
Description -
Location Contig710: 9466-12310
Sequence    

Annotation

kegg
ID pop:POPTR_0011s15220g
description POPTRDRAFT_569242; zinc finger family protein
nr
ID XP_011004359.1
description PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067K073
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20335 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55211: 9480-12262 , PASA_asmbl_55212: 9480-11735
cDNA
(Sanger)
(ID:Location)		 039_O01.ab1: 10610-12246

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
2 Hb_001439_150 0.0767159441 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
3 Hb_006185_050 0.0775033822 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
4 Hb_003464_050 0.0814530772 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
5 Hb_001305_010 0.0836980095 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
6 Hb_003175_010 0.0863090747 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
7 Hb_007951_060 0.0863630937 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_001481_170 0.0874258707 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007904_200 0.0874616981 - - protein binding protein, putative [Ricinus communis]
10 Hb_000451_010 0.0874873254 - - secretory carrier membrane protein, putative [Ricinus communis]
11 Hb_000392_300 0.087508022 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
12 Hb_001926_030 0.0914116394 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_048937_040 0.0914667111 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
14 Hb_000395_170 0.0920678652 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
15 Hb_143629_210 0.092259656 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
16 Hb_000089_220 0.0935751165 - - PREDICTED: protein FAM133-like [Populus euphratica]
17 Hb_000592_080 0.0935925562 - - PREDICTED: thymidylate kinase [Jatropha curcas]
18 Hb_002506_020 0.094347273 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
19 Hb_000618_040 0.094437809 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
20 Hb_106552_050 0.0944490399 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]

Gene co-expression network

sample Hb_000710_020 Hb_000710_020 Hb_001439_150 Hb_001439_150 Hb_000710_020--Hb_001439_150 Hb_006185_050 Hb_006185_050 Hb_000710_020--Hb_006185_050 Hb_003464_050 Hb_003464_050 Hb_000710_020--Hb_003464_050 Hb_001305_010 Hb_001305_010 Hb_000710_020--Hb_001305_010 Hb_003175_010 Hb_003175_010 Hb_000710_020--Hb_003175_010 Hb_007951_060 Hb_007951_060 Hb_000710_020--Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_002685_140 Hb_002685_140 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000089_220 Hb_000089_220 Hb_006185_050--Hb_000089_220 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_006185_050--Hb_003175_010 Hb_005532_050 Hb_005532_050 Hb_003464_050--Hb_005532_050 Hb_001926_030 Hb_001926_030 Hb_003464_050--Hb_001926_030 Hb_003464_050--Hb_001595_030 Hb_143629_210 Hb_143629_210 Hb_003464_050--Hb_143629_210 Hb_008803_090 Hb_008803_090 Hb_003464_050--Hb_008803_090 Hb_000152_380 Hb_000152_380 Hb_003464_050--Hb_000152_380 Hb_001305_010--Hb_007951_060 Hb_003417_020 Hb_003417_020 Hb_001305_010--Hb_003417_020 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_001305_010--Hb_000327_120 Hb_000853_430 Hb_000853_430 Hb_001305_010--Hb_000853_430 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_007951_060--Hb_000327_120 Hb_007951_060--Hb_000926_280 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7066 10.3955 16.3753 11.0091 23.2799 25.8706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7899 16.8042 22.1205 6.86782 6.49361

CAGE analysis