Hb_000059_340

Information

Type transcription factor
Description TF Family: SOH1
Location Contig59: 303668-306261
Sequence    

Annotation

kegg
ID gmx:100527879
description uncharacterized LOC100527879
nr
ID NP_001235064.1
description uncharacterized protein LOC100527879 [Glycine max]
swissprot
ID Q8VYB1
description Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1
trembl
ID I1LDY7
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50182: 299726-302690 , PASA_asmbl_50183: 302835-303102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_340 0.0 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
2 Hb_000407_040 0.0846636211 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_000010_240 0.104816043 - - Protein bem46, putative [Ricinus communis]
4 Hb_002681_060 0.1140266012 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
5 Hb_006261_090 0.1202471062 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
6 Hb_000061_470 0.1222307485 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
7 Hb_000866_280 0.1265040599 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
8 Hb_008103_110 0.1295452185 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000291_030 0.1304250758 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
10 Hb_001477_070 0.1308346316 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007432_070 0.1355008568 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
12 Hb_000081_010 0.1365209675 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
13 Hb_001377_360 0.1398089406 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
14 Hb_005565_050 0.1410297428 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
15 Hb_000510_330 0.1422240655 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
16 Hb_027073_030 0.1430990717 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
17 Hb_002228_110 0.1432842063 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
18 Hb_000579_190 0.1443430863 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
19 Hb_004724_220 0.145609685 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
20 Hb_000211_120 0.1463800455 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_000059_340 Hb_000059_340 Hb_000407_040 Hb_000407_040 Hb_000059_340--Hb_000407_040 Hb_000010_240 Hb_000010_240 Hb_000059_340--Hb_000010_240 Hb_002681_060 Hb_002681_060 Hb_000059_340--Hb_002681_060 Hb_006261_090 Hb_006261_090 Hb_000059_340--Hb_006261_090 Hb_000061_470 Hb_000061_470 Hb_000059_340--Hb_000061_470 Hb_000866_280 Hb_000866_280 Hb_000059_340--Hb_000866_280 Hb_000407_040--Hb_002681_060 Hb_000407_040--Hb_000010_240 Hb_000407_040--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_000407_040--Hb_001477_070 Hb_008103_110 Hb_008103_110 Hb_000407_040--Hb_008103_110 Hb_005488_140 Hb_005488_140 Hb_000010_240--Hb_005488_140 Hb_004800_250 Hb_004800_250 Hb_000010_240--Hb_004800_250 Hb_000010_240--Hb_000061_470 Hb_000983_090 Hb_000983_090 Hb_000010_240--Hb_000983_090 Hb_000130_380 Hb_000130_380 Hb_002681_060--Hb_000130_380 Hb_002681_060--Hb_000061_470 Hb_002681_060--Hb_001477_070 Hb_002681_060--Hb_000010_240 Hb_001898_240 Hb_001898_240 Hb_006261_090--Hb_001898_240 Hb_002228_110 Hb_002228_110 Hb_006261_090--Hb_002228_110 Hb_000329_590 Hb_000329_590 Hb_006261_090--Hb_000329_590 Hb_004648_090 Hb_004648_090 Hb_006261_090--Hb_004648_090 Hb_004128_200 Hb_004128_200 Hb_006261_090--Hb_004128_200 Hb_001671_040 Hb_001671_040 Hb_006261_090--Hb_001671_040 Hb_004586_140 Hb_004586_140 Hb_000061_470--Hb_004586_140 Hb_005137_050 Hb_005137_050 Hb_000061_470--Hb_005137_050 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_000866_280--Hb_000010_240 Hb_003621_020 Hb_003621_020 Hb_000866_280--Hb_003621_020 Hb_000866_280--Hb_000407_040 Hb_001195_040 Hb_001195_040 Hb_000866_280--Hb_001195_040 Hb_000866_280--Hb_004800_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1956 10.6705 14.1516 3.00202 5.74532 5.98902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38221 6.4846 3.94158 4.21694 1.06684

CAGE analysis