Hb_000878_070

Information

Type -
Description -
Location Contig878: 86162-90704
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06670g
description POPTRDRAFT_576461; hypothetical protein
nr
ID XP_002322768.2
description hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
swissprot
ID Q9ZT42
description E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1
trembl
ID B9IIH4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06670g PE=4 SV=2
Gene Ontology
ID GO:0005515
description ring-h2 group f2a isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61301: 85991-90561
cDNA
(Sanger)
(ID:Location)		 007_I17.ab1: 87703-90542 , 007_J05.ab1: 87716-90561 , 039_D16.ab1: 87782-90561 , 040_L15.ab1: 87683-90542

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_070 0.0 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
2 Hb_000886_050 0.0884923816 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
3 Hb_000061_470 0.0921618621 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
4 Hb_000649_110 0.0947340481 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
5 Hb_004586_140 0.0948134387 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
6 Hb_008103_110 0.0959926036 - - ATP binding protein, putative [Ricinus communis]
7 Hb_004586_300 0.1005968628 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
8 Hb_000179_070 0.1009082318 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
9 Hb_000357_110 0.1016498523 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
10 Hb_012762_030 0.1029495527 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
11 Hb_003175_030 0.1047844022 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
12 Hb_002820_030 0.1059231536 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
13 Hb_005306_190 0.1085946426 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
14 Hb_000185_070 0.1092671473 - - conserved hypothetical protein [Ricinus communis]
15 Hb_095296_010 0.1092707204 - - PREDICTED: syntaxin-32 [Jatropha curcas]
16 Hb_012055_060 0.1092775625 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
17 Hb_000010_240 0.1095773731 - - Protein bem46, putative [Ricinus communis]
18 Hb_008511_090 0.1102095913 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
19 Hb_009767_100 0.1103694202 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
20 Hb_006588_210 0.1107948636 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]

Gene co-expression network

sample Hb_000878_070 Hb_000878_070 Hb_000886_050 Hb_000886_050 Hb_000878_070--Hb_000886_050 Hb_000061_470 Hb_000061_470 Hb_000878_070--Hb_000061_470 Hb_000649_110 Hb_000649_110 Hb_000878_070--Hb_000649_110 Hb_004586_140 Hb_004586_140 Hb_000878_070--Hb_004586_140 Hb_008103_110 Hb_008103_110 Hb_000878_070--Hb_008103_110 Hb_004586_300 Hb_004586_300 Hb_000878_070--Hb_004586_300 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090 Hb_000061_470--Hb_004586_140 Hb_005137_050 Hb_005137_050 Hb_000061_470--Hb_005137_050 Hb_000407_040 Hb_000407_040 Hb_000061_470--Hb_000407_040 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_001221_110 Hb_001221_110 Hb_000649_110--Hb_001221_110 Hb_000028_370 Hb_000028_370 Hb_000649_110--Hb_000028_370 Hb_002205_110 Hb_002205_110 Hb_000649_110--Hb_002205_110 Hb_008725_230 Hb_008725_230 Hb_000649_110--Hb_008725_230 Hb_001359_050 Hb_001359_050 Hb_000649_110--Hb_001359_050 Hb_000649_110--Hb_000886_050 Hb_004586_140--Hb_000179_070 Hb_012389_020 Hb_012389_020 Hb_004586_140--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_004586_140--Hb_000302_270 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320 Hb_008103_110--Hb_000886_050 Hb_001225_030 Hb_001225_030 Hb_008103_110--Hb_001225_030 Hb_000803_070 Hb_000803_070 Hb_008103_110--Hb_000803_070 Hb_006588_210 Hb_006588_210 Hb_008103_110--Hb_006588_210 Hb_008103_110--Hb_005137_050 Hb_006059_040 Hb_006059_040 Hb_004586_300--Hb_006059_040 Hb_002232_410 Hb_002232_410 Hb_004586_300--Hb_002232_410 Hb_000069_380 Hb_000069_380 Hb_004586_300--Hb_000069_380 Hb_002445_060 Hb_002445_060 Hb_004586_300--Hb_002445_060 Hb_004586_300--Hb_001221_110 Hb_000120_170 Hb_000120_170 Hb_004586_300--Hb_000120_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5028 57.6592 44.0263 33.7252 22.9696 26.2526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.1017 37.4987 34.6568 28.4167 11.366

CAGE analysis