Hb_001225_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig1225: 36818-54735
Sequence    

Annotation

kegg
ID rcu:RCOM_0835000
description DNA binding protein, putative
nr
ID XP_012093140.1
description PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
swissprot
ID Q8VWK4
description Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1
trembl
ID A0A067L7W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16345 PE=4 SV=1
Gene Ontology
ID GO:0000786
description telomere repeat-binding factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06828: 45911-54769 , PASA_asmbl_06830: 53551-53684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001225_030 0.0 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
2 Hb_003682_030 0.0695719182 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
3 Hb_000375_290 0.0695810768 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000645_170 0.0713357771 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004870_050 0.0754033258 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
6 Hb_000094_090 0.0760781069 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
7 Hb_001754_030 0.0792437898 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
8 Hb_000861_080 0.0793893763 - - PREDICTED: protein ELC-like [Jatropha curcas]
9 Hb_060094_020 0.0794463851 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
10 Hb_023226_070 0.0796229517 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000069_130 0.0807388706 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
12 Hb_000723_110 0.0811979725 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
13 Hb_001258_100 0.081250939 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
14 Hb_002477_250 0.0833360891 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
15 Hb_003927_040 0.0834564369 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
16 Hb_003117_020 0.083477091 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
17 Hb_026980_020 0.0875941406 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
18 Hb_008695_090 0.0883747197 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
19 Hb_002325_040 0.0892752163 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
20 Hb_002811_040 0.0902621986 - - 5'->3' exoribonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_001225_030 Hb_001225_030 Hb_003682_030 Hb_003682_030 Hb_001225_030--Hb_003682_030 Hb_000375_290 Hb_000375_290 Hb_001225_030--Hb_000375_290 Hb_000645_170 Hb_000645_170 Hb_001225_030--Hb_000645_170 Hb_004870_050 Hb_004870_050 Hb_001225_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_001225_030--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_001225_030--Hb_001754_030 Hb_008695_090 Hb_008695_090 Hb_003682_030--Hb_008695_090 Hb_000723_110 Hb_000723_110 Hb_003682_030--Hb_000723_110 Hb_005306_160 Hb_005306_160 Hb_003682_030--Hb_005306_160 Hb_003682_030--Hb_004870_050 Hb_003682_030--Hb_000094_090 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_023226_070 Hb_023226_070 Hb_000375_290--Hb_023226_070 Hb_003927_040 Hb_003927_040 Hb_000645_170--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_000645_170--Hb_008568_020 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_154580_010 Hb_154580_010 Hb_000645_170--Hb_154580_010 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_004870_050--Hb_003927_040 Hb_004870_050--Hb_000094_090 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_000363_120 Hb_000363_120 Hb_000094_090--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000094_090--Hb_000809_160 Hb_000094_090--Hb_000723_110 Hb_000373_230 Hb_000373_230 Hb_000094_090--Hb_000373_230 Hb_000094_090--Hb_023226_070 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_001754_030--Hb_023226_070 Hb_001754_030--Hb_060094_020 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_001754_030--Hb_000723_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3716 24.3222 17.0965 9.5488 9.93457 11.4516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.98159 9.87034 6.27323 8.13494 8.29984

CAGE analysis