Hb_003682_030

Information

Type -
Description -
Location Contig3682: 49822-57937
Sequence    

Annotation

kegg
ID cic:CICLE_v10020876mg
description hypothetical protein
nr
ID XP_006439920.1
description hypothetical protein CICLE_v10020876mg [Citrus clementina]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID V4TNE1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020876mg PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37859: 57100-57531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003682_030 0.0 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
2 Hb_001225_030 0.0695719182 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
3 Hb_008695_090 0.079739367 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
4 Hb_000723_110 0.0822610974 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
5 Hb_005306_160 0.0824516902 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
6 Hb_004870_050 0.0834554296 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
7 Hb_000094_090 0.0836646667 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
8 Hb_002228_110 0.0858658528 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
9 Hb_000905_210 0.0875330162 - - PREDICTED: protein gar2 [Jatropha curcas]
10 Hb_000809_160 0.0882316386 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
11 Hb_000861_080 0.0889984902 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_002477_250 0.0895888561 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
13 Hb_001754_030 0.0901662686 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
14 Hb_004648_090 0.0909517874 - - peroxisomal biogenesis factor, putative [Ricinus communis]
15 Hb_000866_450 0.0912347302 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_010998_040 0.091398932 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
17 Hb_000373_230 0.0918567558 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
18 Hb_006588_210 0.0926335562 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
19 Hb_007017_070 0.0951612539 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
20 Hb_000375_290 0.0956224758 - - DAG protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003682_030 Hb_003682_030 Hb_001225_030 Hb_001225_030 Hb_003682_030--Hb_001225_030 Hb_008695_090 Hb_008695_090 Hb_003682_030--Hb_008695_090 Hb_000723_110 Hb_000723_110 Hb_003682_030--Hb_000723_110 Hb_005306_160 Hb_005306_160 Hb_003682_030--Hb_005306_160 Hb_004870_050 Hb_004870_050 Hb_003682_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_003682_030--Hb_000094_090 Hb_000375_290 Hb_000375_290 Hb_001225_030--Hb_000375_290 Hb_000645_170 Hb_000645_170 Hb_001225_030--Hb_000645_170 Hb_001225_030--Hb_004870_050 Hb_001225_030--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_001225_030--Hb_001754_030 Hb_004943_030 Hb_004943_030 Hb_008695_090--Hb_004943_030 Hb_008695_090--Hb_000375_290 Hb_008695_090--Hb_000723_110 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230 Hb_000076_160 Hb_000076_160 Hb_005306_160--Hb_000076_160 Hb_002046_110 Hb_002046_110 Hb_005306_160--Hb_002046_110 Hb_000928_220 Hb_000928_220 Hb_005306_160--Hb_000928_220 Hb_000576_020 Hb_000576_020 Hb_005306_160--Hb_000576_020 Hb_000070_080 Hb_000070_080 Hb_005306_160--Hb_000070_080 Hb_000309_040 Hb_000309_040 Hb_005306_160--Hb_000309_040 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_004870_050--Hb_000094_090 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_000363_120 Hb_000363_120 Hb_000094_090--Hb_000363_120 Hb_000094_090--Hb_000809_160 Hb_000094_090--Hb_000373_230 Hb_023226_070 Hb_023226_070 Hb_000094_090--Hb_023226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.8864 19.976 13.7675 9.50671 10.9825 8.39807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.57802 9.05548 6.22747 4.87655 5.55618

CAGE analysis