Hb_004870_050

Information

Type -
Description -
Location Contig4870: 65301-69880
Sequence    

Annotation

kegg
ID rcu:RCOM_0436820
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012090015.1
description PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L992
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01531 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dbp3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45044: 63831-65421 , PASA_asmbl_45045: 66818-67169 , PASA_asmbl_45046: 65431-70080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004870_050 0.0 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
2 Hb_060094_020 0.0623849533 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
3 Hb_003927_040 0.0647287651 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
4 Hb_000094_090 0.0693136462 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
5 Hb_002110_160 0.0697311803 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
6 Hb_000282_090 0.0720055823 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_004648_090 0.0731394789 - - peroxisomal biogenesis factor, putative [Ricinus communis]
8 Hb_000375_290 0.0747412682 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_023226_070 0.0748098488 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000645_170 0.0749862621 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001225_030 0.0754033258 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
12 Hb_006588_210 0.076072206 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
13 Hb_003929_280 0.0790519039 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
14 Hb_012565_050 0.0790860698 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
15 Hb_000915_060 0.0813371503 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
16 Hb_003682_030 0.0834554296 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
17 Hb_001754_030 0.0835786803 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
18 Hb_000373_230 0.0844828802 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
19 Hb_001410_020 0.0845678925 - - cdk8, putative [Ricinus communis]
20 Hb_000809_160 0.0847882732 - - hypothetical protein JCGZ_12355 [Jatropha curcas]

Gene co-expression network

sample Hb_004870_050 Hb_004870_050 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_000094_090 Hb_000094_090 Hb_004870_050--Hb_000094_090 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_023226_070 Hb_023226_070 Hb_060094_020--Hb_023226_070 Hb_060094_020--Hb_003927_040 Hb_000645_170 Hb_000645_170 Hb_060094_020--Hb_000645_170 Hb_001754_030 Hb_001754_030 Hb_060094_020--Hb_001754_030 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_003929_280 Hb_003929_280 Hb_003927_040--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_003927_040--Hb_000645_170 Hb_008568_020 Hb_008568_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_000363_120 Hb_000363_120 Hb_000094_090--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000094_090--Hb_000809_160 Hb_000723_110 Hb_000723_110 Hb_000094_090--Hb_000723_110 Hb_000373_230 Hb_000373_230 Hb_000094_090--Hb_000373_230 Hb_000094_090--Hb_023226_070 Hb_002110_160--Hb_000282_090 Hb_010775_030 Hb_010775_030 Hb_002110_160--Hb_010775_030 Hb_010287_020 Hb_010287_020 Hb_002110_160--Hb_010287_020 Hb_000207_200 Hb_000207_200 Hb_002110_160--Hb_000207_200 Hb_000868_120 Hb_000868_120 Hb_002110_160--Hb_000868_120 Hb_000282_090--Hb_000207_200 Hb_000089_210 Hb_000089_210 Hb_000282_090--Hb_000089_210 Hb_002716_060 Hb_002716_060 Hb_000282_090--Hb_002716_060 Hb_002413_010 Hb_002413_010 Hb_000282_090--Hb_002413_010 Hb_004648_090--Hb_002110_160 Hb_002228_110 Hb_002228_110 Hb_004648_090--Hb_002228_110 Hb_005389_100 Hb_005389_100 Hb_004648_090--Hb_005389_100 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_001671_040 Hb_001671_040 Hb_004648_090--Hb_001671_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.29659 17.5556 16.1323 7.93368 9.3732 7.79988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.10856 10.911 6.67379 7.36905 8.86616

CAGE analysis