Hb_000169_080

Information

Type transcription factor
Description TF Family: TUB
Location Contig169: 54115-60489
Sequence    

Annotation

kegg
ID tcc:TCM_004538
description Tubby like protein 3 isoform 1
nr
ID XP_012082663.1
description PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
swissprot
ID Q8VY21
description Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=1 SV=1
trembl
ID A0A067JZ38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13854 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15697: 54841-60718 , PASA_asmbl_15698: 55722-60718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_080 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
2 Hb_001761_120 0.0778259643 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
3 Hb_043792_010 0.0846120022 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
4 Hb_004943_030 0.0850905218 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
5 Hb_001410_020 0.0867655829 - - cdk8, putative [Ricinus communis]
6 Hb_001005_020 0.0871857194 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
7 Hb_008695_090 0.0877448142 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
8 Hb_004870_050 0.0892371404 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
9 Hb_060094_020 0.0898041751 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
10 Hb_006588_210 0.0900487355 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
11 Hb_000373_230 0.0901353887 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
12 Hb_001300_010 0.0905996087 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000291_010 0.0927604509 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
14 Hb_000951_100 0.0932887948 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
15 Hb_000359_040 0.0938993974 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002073_200 0.0959884385 - - Phosphatase 2A-2 [Theobroma cacao]
17 Hb_000567_190 0.0973089557 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
18 Hb_001754_030 0.0987148913 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
19 Hb_003927_040 0.0989895301 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
20 Hb_007290_030 0.0990534582 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_080 Hb_000169_080 Hb_001761_120 Hb_001761_120 Hb_000169_080--Hb_001761_120 Hb_043792_010 Hb_043792_010 Hb_000169_080--Hb_043792_010 Hb_004943_030 Hb_004943_030 Hb_000169_080--Hb_004943_030 Hb_001410_020 Hb_001410_020 Hb_000169_080--Hb_001410_020 Hb_001005_020 Hb_001005_020 Hb_000169_080--Hb_001005_020 Hb_008695_090 Hb_008695_090 Hb_000169_080--Hb_008695_090 Hb_170416_010 Hb_170416_010 Hb_001761_120--Hb_170416_010 Hb_003531_080 Hb_003531_080 Hb_001761_120--Hb_003531_080 Hb_007290_030 Hb_007290_030 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_000103_340 Hb_000103_340 Hb_001761_120--Hb_000103_340 Hb_000959_230 Hb_000959_230 Hb_043792_010--Hb_000959_230 Hb_002909_040 Hb_002909_040 Hb_043792_010--Hb_002909_040 Hb_002716_060 Hb_002716_060 Hb_043792_010--Hb_002716_060 Hb_000089_210 Hb_000089_210 Hb_043792_010--Hb_000089_210 Hb_043792_010--Hb_001761_120 Hb_002326_040 Hb_002326_040 Hb_043792_010--Hb_002326_040 Hb_060094_020 Hb_060094_020 Hb_004943_030--Hb_060094_020 Hb_003605_050 Hb_003605_050 Hb_004943_030--Hb_003605_050 Hb_004943_030--Hb_008695_090 Hb_001754_030 Hb_001754_030 Hb_004943_030--Hb_001754_030 Hb_000227_270 Hb_000227_270 Hb_004943_030--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_004943_030--Hb_023226_070 Hb_000260_180 Hb_000260_180 Hb_001410_020--Hb_000260_180 Hb_162275_050 Hb_162275_050 Hb_001410_020--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_001410_020--Hb_012779_090 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_006588_210 Hb_006588_210 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_000579_190 Hb_000579_190 Hb_001005_020--Hb_000579_190 Hb_001005_020--Hb_002909_040 Hb_000352_350 Hb_000352_350 Hb_001005_020--Hb_000352_350 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_001005_020--Hb_007290_030 Hb_000375_290 Hb_000375_290 Hb_008695_090--Hb_000375_290 Hb_003682_030 Hb_003682_030 Hb_008695_090--Hb_003682_030 Hb_000723_110 Hb_000723_110 Hb_008695_090--Hb_000723_110 Hb_008695_090--Hb_001754_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6647 36.8843 42.7914 20.6058 22.8587 17.9162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2706 20.2375 27.6851 16.1439 15.0542

CAGE analysis