Hb_000048_080

Information

Type -
Description -
Location Contig48: 156290-164608
Sequence    

Annotation

kegg
ID rcu:RCOM_0243690
description cak1, putative (EC:2.7.11.23)
nr
ID XP_012072561.1
description PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
swissprot
ID P29620
description Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1
trembl
ID A0A067L1C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05353 PE=4 SV=1
Gene Ontology
ID GO:0005524
description cyclin-dependent kinase d-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44671: 156325-164326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000048_080 0.0 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
2 Hb_000086_430 0.0663375504 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
3 Hb_006452_180 0.0686896657 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_000375_290 0.0755618054 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_010287_020 0.0766058357 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
6 Hb_003470_040 0.0791547865 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
7 Hb_004319_050 0.0831912759 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
8 Hb_005288_140 0.0833824253 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
9 Hb_033152_090 0.0848967835 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
10 Hb_000866_450 0.0850613857 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_001009_120 0.0870362252 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
12 Hb_001500_120 0.0874820576 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_009449_060 0.0878451124 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
14 Hb_004943_030 0.0883648063 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
15 Hb_000227_270 0.0884359548 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
16 Hb_001558_060 0.0893724734 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
17 Hb_000956_040 0.0898772766 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
18 Hb_000089_210 0.0903136396 - - unknown [Medicago truncatula]
19 Hb_005977_030 0.091501216 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
20 Hb_006538_130 0.0918492311 - - Uncharacterized protein TCM_009867 [Theobroma cacao]

Gene co-expression network

sample Hb_000048_080 Hb_000048_080 Hb_000086_430 Hb_000086_430 Hb_000048_080--Hb_000086_430 Hb_006452_180 Hb_006452_180 Hb_000048_080--Hb_006452_180 Hb_000375_290 Hb_000375_290 Hb_000048_080--Hb_000375_290 Hb_010287_020 Hb_010287_020 Hb_000048_080--Hb_010287_020 Hb_003470_040 Hb_003470_040 Hb_000048_080--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000048_080--Hb_004319_050 Hb_001369_030 Hb_001369_030 Hb_000086_430--Hb_001369_030 Hb_001500_120 Hb_001500_120 Hb_000086_430--Hb_001500_120 Hb_001009_120 Hb_001009_120 Hb_000086_430--Hb_001009_120 Hb_001558_060 Hb_001558_060 Hb_000086_430--Hb_001558_060 Hb_004225_060 Hb_004225_060 Hb_000086_430--Hb_004225_060 Hb_006452_180--Hb_010287_020 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_001245_050 Hb_001245_050 Hb_006452_180--Hb_001245_050 Hb_006452_180--Hb_001009_120 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_023226_070 Hb_023226_070 Hb_000375_290--Hb_023226_070 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060 Hb_029695_080 Hb_029695_080 Hb_003470_040--Hb_029695_080 Hb_000207_200 Hb_000207_200 Hb_003470_040--Hb_000207_200 Hb_003470_040--Hb_033642_120 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_003470_040--Hb_000089_210 Hb_003470_040--Hb_002110_160 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.74482 16.6882 19.6979 10.1572 4.8597 6.09199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.85998 5.647 4.12897 6.66272 6.90277

CAGE analysis