Hb_000010_240

Information

Type -
Description -
Location Contig10: 265266-273049
Sequence    

Annotation

kegg
ID rcu:RCOM_1507860
description Protein bem46, putative
nr
ID XP_002511280.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q7ZVZ7
description Alpha/beta hydrolase domain-containing protein 17C OS=Danio rerio GN=abhd17c PE=2 SV=1
trembl
ID B9RAQ5
description Protein bem46, putative OS=Ricinus communis GN=RCOM_1507860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00157: 267338-273221 , PASA_asmbl_00158: 269391-269636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_240 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_000407_040 0.0844646835 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_005488_140 0.0951781215 - - 30S ribosomal protein S5, putative [Ricinus communis]
4 Hb_004800_250 0.0988625204 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
5 Hb_000059_340 0.104816043 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
6 Hb_000061_470 0.1062198876 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
7 Hb_000983_090 0.108436344 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
8 Hb_012762_030 0.1087346001 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
9 Hb_000878_070 0.1095773731 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
10 Hb_008103_110 0.1121142281 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000866_280 0.1121795936 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
12 Hb_000185_070 0.1124338997 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005137_050 0.1127749579 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
14 Hb_002681_060 0.1174747227 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
15 Hb_002411_030 0.1186469141 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
16 Hb_001789_060 0.1190300428 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
17 Hb_004109_040 0.1196083291 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
18 Hb_000318_190 0.1211342134 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
19 Hb_000951_100 0.1231344906 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
20 Hb_180424_010 0.1240278725 - - Charged multivesicular body protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000010_240 Hb_000010_240 Hb_000407_040 Hb_000407_040 Hb_000010_240--Hb_000407_040 Hb_005488_140 Hb_005488_140 Hb_000010_240--Hb_005488_140 Hb_004800_250 Hb_004800_250 Hb_000010_240--Hb_004800_250 Hb_000059_340 Hb_000059_340 Hb_000010_240--Hb_000059_340 Hb_000061_470 Hb_000061_470 Hb_000010_240--Hb_000061_470 Hb_000983_090 Hb_000983_090 Hb_000010_240--Hb_000983_090 Hb_002681_060 Hb_002681_060 Hb_000407_040--Hb_002681_060 Hb_000407_040--Hb_000059_340 Hb_000407_040--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_000407_040--Hb_001477_070 Hb_008103_110 Hb_008103_110 Hb_000407_040--Hb_008103_110 Hb_000185_070 Hb_000185_070 Hb_005488_140--Hb_000185_070 Hb_000302_270 Hb_000302_270 Hb_005488_140--Hb_000302_270 Hb_180424_010 Hb_180424_010 Hb_005488_140--Hb_180424_010 Hb_153553_030 Hb_153553_030 Hb_005488_140--Hb_153553_030 Hb_000010_110 Hb_000010_110 Hb_005488_140--Hb_000010_110 Hb_003001_080 Hb_003001_080 Hb_005488_140--Hb_003001_080 Hb_004800_250--Hb_000185_070 Hb_004800_250--Hb_180424_010 Hb_012762_030 Hb_012762_030 Hb_004800_250--Hb_012762_030 Hb_004800_250--Hb_005488_140 Hb_000853_430 Hb_000853_430 Hb_004800_250--Hb_000853_430 Hb_000059_340--Hb_002681_060 Hb_006261_090 Hb_006261_090 Hb_000059_340--Hb_006261_090 Hb_000059_340--Hb_000061_470 Hb_000866_280 Hb_000866_280 Hb_000059_340--Hb_000866_280 Hb_004586_140 Hb_004586_140 Hb_000061_470--Hb_004586_140 Hb_005137_050 Hb_005137_050 Hb_000061_470--Hb_005137_050 Hb_000179_070 Hb_000179_070 Hb_000061_470--Hb_000179_070 Hb_000878_070 Hb_000878_070 Hb_000061_470--Hb_000878_070 Hb_002950_100 Hb_002950_100 Hb_000061_470--Hb_002950_100 Hb_000856_190 Hb_000856_190 Hb_000983_090--Hb_000856_190 Hb_002411_030 Hb_002411_030 Hb_000983_090--Hb_002411_030 Hb_000983_090--Hb_012762_030 Hb_004204_170 Hb_004204_170 Hb_000983_090--Hb_004204_170 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11505 4.97072 6.13736 1.65777 2.40141 2.70559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.39569 3.97371 3.93401 2.63191 0.895186

CAGE analysis