Hb_004800_250

Information

Type -
Description -
Location Contig4800: 190981-191816
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12820g
description POPTRDRAFT_1083525; hypothetical protein
nr
ID XP_012071640.1
description PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
swissprot
ID P40389
description Protein-lysine N-methyltransferase rrg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrg1 PE=2 SV=1
trembl
ID A0A067KUE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44716: 190963-191851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_250 0.0 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
2 Hb_000185_070 0.0961724851 - - conserved hypothetical protein [Ricinus communis]
3 Hb_180424_010 0.0975364476 - - Charged multivesicular body protein, putative [Ricinus communis]
4 Hb_000010_240 0.0988625204 - - Protein bem46, putative [Ricinus communis]
5 Hb_012762_030 0.1006679684 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
6 Hb_005488_140 0.1017942885 - - 30S ribosomal protein S5, putative [Ricinus communis]
7 Hb_000853_430 0.1020203472 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
8 Hb_001247_130 0.1068872638 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
9 Hb_000000_210 0.110119768 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
10 Hb_007982_080 0.112035869 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
11 Hb_005137_050 0.114361537 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
12 Hb_000407_040 0.1148854158 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
13 Hb_000302_270 0.1151744032 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
14 Hb_000318_190 0.1174765574 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
15 Hb_016467_010 0.1193990671 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
16 Hb_001953_070 0.1200889433 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
17 Hb_000983_090 0.1210757877 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
18 Hb_027428_010 0.1217112836 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
19 Hb_004678_040 0.1217691929 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
20 Hb_020367_050 0.1221006721 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004800_250 Hb_004800_250 Hb_000185_070 Hb_000185_070 Hb_004800_250--Hb_000185_070 Hb_180424_010 Hb_180424_010 Hb_004800_250--Hb_180424_010 Hb_000010_240 Hb_000010_240 Hb_004800_250--Hb_000010_240 Hb_012762_030 Hb_012762_030 Hb_004800_250--Hb_012762_030 Hb_005488_140 Hb_005488_140 Hb_004800_250--Hb_005488_140 Hb_000853_430 Hb_000853_430 Hb_004800_250--Hb_000853_430 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_027428_010 Hb_027428_010 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030 Hb_000000_210 Hb_000000_210 Hb_180424_010--Hb_000000_210 Hb_180424_010--Hb_000853_430 Hb_180424_010--Hb_005488_140 Hb_000856_380 Hb_000856_380 Hb_180424_010--Hb_000856_380 Hb_004410_080 Hb_004410_080 Hb_180424_010--Hb_004410_080 Hb_004678_040 Hb_004678_040 Hb_180424_010--Hb_004678_040 Hb_000407_040 Hb_000407_040 Hb_000010_240--Hb_000407_040 Hb_000010_240--Hb_005488_140 Hb_000059_340 Hb_000059_340 Hb_000010_240--Hb_000059_340 Hb_000061_470 Hb_000061_470 Hb_000010_240--Hb_000061_470 Hb_000983_090 Hb_000983_090 Hb_000010_240--Hb_000983_090 Hb_012762_030--Hb_000983_090 Hb_012762_030--Hb_000185_070 Hb_004208_030 Hb_004208_030 Hb_012762_030--Hb_004208_030 Hb_000926_090 Hb_000926_090 Hb_012762_030--Hb_000926_090 Hb_002754_010 Hb_002754_010 Hb_012762_030--Hb_002754_010 Hb_002073_200 Hb_002073_200 Hb_012762_030--Hb_002073_200 Hb_005488_140--Hb_000185_070 Hb_005488_140--Hb_000302_270 Hb_153553_030 Hb_153553_030 Hb_005488_140--Hb_153553_030 Hb_000010_110 Hb_000010_110 Hb_005488_140--Hb_000010_110 Hb_003001_080 Hb_003001_080 Hb_005488_140--Hb_003001_080 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000853_430--Hb_000302_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.93996 2.96394 4.79903 1.81639 2.37073 1.84838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07629 3.59084 3.60357 2.1269 1.15939

CAGE analysis