Hb_001195_040

Information

Type -
Description -
Location Contig1195: 26824-31272
Sequence    

Annotation

kegg
ID tcc:TCM_034074
description 20S proteasome alpha subunit F2
nr
ID XP_012466351.1
description PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
swissprot
ID O23712
description Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2
trembl
ID A0A0D2NLM9
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G126700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-1-b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05766: 26783-31267 , PASA_asmbl_05767: 29334-30068
cDNA
(Sanger)
(ID:Location)		 022_E21.ab1: 26856-30531 , 023_C18.ab1: 26818-27267 , 034_I21.ab1: 26818-30775 , 051_B24.ab1: 26818-30762

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_040 0.0 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
2 Hb_000661_140 0.0894919612 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
3 Hb_002639_150 0.1089696387 - - -
4 Hb_000853_430 0.1101591755 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
5 Hb_000926_310 0.1130557618 - - uncharacterized protein LOC100500241 [Glycine max]
6 Hb_001934_030 0.1147068877 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
7 Hb_000003_600 0.1152895295 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
8 Hb_008112_040 0.1179526811 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
9 Hb_011013_010 0.120147058 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
10 Hb_140833_010 0.1229670566 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
11 Hb_020367_050 0.1243406337 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
12 Hb_005511_170 0.1250795587 - - hypothetical protein CISIN_1g030718mg [Citrus sinensis]
13 Hb_004800_250 0.1255870465 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
14 Hb_000407_040 0.1266581922 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
15 Hb_000000_210 0.1282646721 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
16 Hb_000836_430 0.1286941942 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
17 Hb_004375_080 0.1287935616 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
18 Hb_004531_070 0.1291994723 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
19 Hb_003069_010 0.130452612 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
20 Hb_001005_060 0.1314364007 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_040 Hb_001195_040 Hb_000661_140 Hb_000661_140 Hb_001195_040--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_001195_040--Hb_002639_150 Hb_000853_430 Hb_000853_430 Hb_001195_040--Hb_000853_430 Hb_000926_310 Hb_000926_310 Hb_001195_040--Hb_000926_310 Hb_001934_030 Hb_001934_030 Hb_001195_040--Hb_001934_030 Hb_000003_600 Hb_000003_600 Hb_001195_040--Hb_000003_600 Hb_000661_140--Hb_002639_150 Hb_000661_140--Hb_000926_310 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_005288_150 Hb_005288_150 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_002639_150--Hb_000926_310 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_002639_150--Hb_020367_050 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_004678_040 Hb_004678_040 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000853_430--Hb_000302_270 Hb_000926_310--Hb_020367_050 Hb_000926_310--Hb_003687_230 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_007154_020 Hb_007154_020 Hb_001934_030--Hb_007154_020 Hb_012627_050 Hb_012627_050 Hb_001934_030--Hb_012627_050 Hb_001934_030--Hb_000853_430 Hb_001005_060 Hb_001005_060 Hb_001934_030--Hb_001005_060 Hb_003069_010 Hb_003069_010 Hb_001934_030--Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_001934_030--Hb_005186_050 Hb_000003_600--Hb_002639_150 Hb_000003_600--Hb_000926_310 Hb_000003_600--Hb_003687_230 Hb_000003_600--Hb_005288_150 Hb_000390_170 Hb_000390_170 Hb_000003_600--Hb_000390_170 Hb_002820_110 Hb_002820_110 Hb_000003_600--Hb_002820_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
355.479 144.722 388.391 70.563 212.865 169.577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
177.832 235.471 196.056 63.7786 49.3109

CAGE analysis