Hb_001005_060

Information

Type transcription factor
Description TF Family: GNAT
Location Contig1005: 45357-47895
Sequence    

Annotation

kegg
ID rcu:RCOM_1445070
description n-acetyltransferase mak3, putative (EC:2.3.1.88)
nr
ID XP_012067356.1
description PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
swissprot
ID O80438
description N-alpha-acetyltransferase MAK3 OS=Arabidopsis thaliana GN=MAK3 PE=2 SV=1
trembl
ID A0A067LCN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26877 PE=4 SV=1
Gene Ontology
ID GO:0004596
description n-alpha-acetyltransferase mak3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00317: 45347-47954
cDNA
(Sanger)
(ID:Location)		 004_B15.ab1: 45410-47954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_060 0.0 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
2 Hb_001934_030 0.0843356181 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
3 Hb_001117_100 0.107434864 - - 40S ribosomal protein S16A [Hevea brasiliensis]
4 Hb_004204_070 0.1176224939 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
5 Hb_012627_050 0.1177097923 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_002918_210 0.1209283699 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
7 Hb_003069_010 0.1229804627 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
8 Hb_000853_430 0.1241090972 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
9 Hb_001776_090 0.1242415061 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
10 Hb_008112_040 0.125720074 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
11 Hb_007154_020 0.125936905 - - -
12 Hb_000141_060 0.1261676157 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
13 Hb_010661_030 0.1300795961 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
14 Hb_001195_040 0.1314364007 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
15 Hb_005186_050 0.1331349023 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
16 Hb_001348_070 0.1346159608 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_012508_030 0.136693792 - - PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
18 Hb_000116_310 0.1377960887 - - 50S robosomal protein L11, putative [Ricinus communis]
19 Hb_000085_240 0.1387723894 - - fimbrin, putative [Ricinus communis]
20 Hb_001439_150 0.1389228412 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001005_060 Hb_001005_060 Hb_001934_030 Hb_001934_030 Hb_001005_060--Hb_001934_030 Hb_001117_100 Hb_001117_100 Hb_001005_060--Hb_001117_100 Hb_004204_070 Hb_004204_070 Hb_001005_060--Hb_004204_070 Hb_012627_050 Hb_012627_050 Hb_001005_060--Hb_012627_050 Hb_002918_210 Hb_002918_210 Hb_001005_060--Hb_002918_210 Hb_003069_010 Hb_003069_010 Hb_001005_060--Hb_003069_010 Hb_007154_020 Hb_007154_020 Hb_001934_030--Hb_007154_020 Hb_001934_030--Hb_012627_050 Hb_000853_430 Hb_000853_430 Hb_001934_030--Hb_000853_430 Hb_001934_030--Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_001934_030--Hb_005186_050 Hb_000663_040 Hb_000663_040 Hb_001117_100--Hb_000663_040 Hb_011571_020 Hb_011571_020 Hb_001117_100--Hb_011571_020 Hb_005332_070 Hb_005332_070 Hb_001117_100--Hb_005332_070 Hb_000421_070 Hb_000421_070 Hb_001117_100--Hb_000421_070 Hb_000019_210 Hb_000019_210 Hb_001117_100--Hb_000019_210 Hb_005993_040 Hb_005993_040 Hb_001117_100--Hb_005993_040 Hb_011794_090 Hb_011794_090 Hb_004204_070--Hb_011794_090 Hb_002272_250 Hb_002272_250 Hb_004204_070--Hb_002272_250 Hb_004994_170 Hb_004994_170 Hb_004204_070--Hb_004994_170 Hb_000141_060 Hb_000141_060 Hb_004204_070--Hb_000141_060 Hb_010661_030 Hb_010661_030 Hb_004204_070--Hb_010661_030 Hb_001404_100 Hb_001404_100 Hb_004204_070--Hb_001404_100 Hb_012627_050--Hb_010661_030 Hb_012627_050--Hb_003069_010 Hb_007576_040 Hb_007576_040 Hb_012627_050--Hb_007576_040 Hb_009421_020 Hb_009421_020 Hb_012627_050--Hb_009421_020 Hb_000392_440 Hb_000392_440 Hb_012627_050--Hb_000392_440 Hb_003050_200 Hb_003050_200 Hb_002918_210--Hb_003050_200 Hb_000808_250 Hb_000808_250 Hb_002918_210--Hb_000808_250 Hb_003292_040 Hb_003292_040 Hb_002918_210--Hb_003292_040 Hb_001348_070 Hb_001348_070 Hb_002918_210--Hb_001348_070 Hb_001564_130 Hb_001564_130 Hb_002918_210--Hb_001564_130 Hb_002918_210--Hb_000663_040 Hb_003069_010--Hb_005186_050 Hb_003069_010--Hb_010661_030 Hb_003607_150 Hb_003607_150 Hb_003069_010--Hb_003607_150 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.65705 2.41362 5.84137 0.976764 6.05252 4.26102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34656 7.789 4.85792 3.06682 0.739972

CAGE analysis