Hb_011013_010

Information

Type -
Description -
Location Contig11013: 13545-15336
Sequence    

Annotation

kegg
ID brp:103864746
description calmodulin-7-like
nr
ID XP_003632230.1
description PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
swissprot
ID P62201
description Calmodulin OS=Lilium longiflorum PE=2 SV=2
trembl
ID G3MHB1
description Putative uncharacterized protein (Fragment) OS=Amblyomma maculatum PE=2 SV=1
Gene Ontology
ID GO:0005829
description calmodulin-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03107: 13671-15692
cDNA
(Sanger)
(ID:Location)		 039_L14.ab1: 13749-15433 , 053_C06.ab1: 13749-15457

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011013_010 0.0 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
2 Hb_000661_140 0.0703024416 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
3 Hb_002639_150 0.0817730005 - - -
4 Hb_012725_070 0.0922102354 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
5 Hb_005288_150 0.1019519763 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
6 Hb_001373_110 0.1020139788 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
7 Hb_004531_070 0.1057297541 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
8 Hb_000976_260 0.1059465837 - - -
9 Hb_000926_310 0.1060732301 - - uncharacterized protein LOC100500241 [Glycine max]
10 Hb_001269_640 0.1075553351 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
11 Hb_027043_020 0.1075888216 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007313_090 0.110219507 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000012_020 0.110746422 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
14 Hb_140833_010 0.111351288 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
15 Hb_000141_250 0.1115748116 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
16 Hb_000003_600 0.1126663032 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
17 Hb_004785_190 0.1150738201 - - PHD finger family protein [Populus trichocarpa]
18 Hb_005085_020 0.1160187024 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
19 Hb_058972_010 0.1162832074 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
20 Hb_001195_040 0.120147058 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]

Gene co-expression network

sample Hb_011013_010 Hb_011013_010 Hb_000661_140 Hb_000661_140 Hb_011013_010--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_011013_010--Hb_002639_150 Hb_012725_070 Hb_012725_070 Hb_011013_010--Hb_012725_070 Hb_005288_150 Hb_005288_150 Hb_011013_010--Hb_005288_150 Hb_001373_110 Hb_001373_110 Hb_011013_010--Hb_001373_110 Hb_004531_070 Hb_004531_070 Hb_011013_010--Hb_004531_070 Hb_000661_140--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000661_140--Hb_000926_310 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_002639_150--Hb_000926_310 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_002639_150--Hb_020367_050 Hb_000141_250 Hb_000141_250 Hb_012725_070--Hb_000141_250 Hb_012725_070--Hb_005288_150 Hb_006817_010 Hb_006817_010 Hb_012725_070--Hb_006817_010 Hb_000808_050 Hb_000808_050 Hb_012725_070--Hb_000808_050 Hb_000260_100 Hb_000260_100 Hb_012725_070--Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_005288_150--Hb_000141_250 Hb_005288_150--Hb_020367_050 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_001329_130 Hb_001329_130 Hb_005288_150--Hb_001329_130 Hb_140833_010 Hb_140833_010 Hb_001373_110--Hb_140833_010 Hb_001373_110--Hb_000661_140 Hb_000976_260 Hb_000976_260 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_002450_040 Hb_002450_040 Hb_001373_110--Hb_002450_040 Hb_003069_010 Hb_003069_010 Hb_004531_070--Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_004531_070--Hb_005186_050 Hb_028841_030 Hb_028841_030 Hb_004531_070--Hb_028841_030 Hb_013405_060 Hb_013405_060 Hb_004531_070--Hb_013405_060 Hb_003607_150 Hb_003607_150 Hb_004531_070--Hb_003607_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1490.42 484.047 1498.42 619.611 790.766 1330.76
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
880.045 923.054 713.918 238.376 319.015

CAGE analysis