Hb_001373_110

Information

Type -
Description -
Location Contig1373: 89823-92898
Sequence    

Annotation

kegg
ID cit:102623606
description COP9 signalosome complex subunit 8-like
nr
ID XP_012065643.1
description PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
swissprot
ID P43255
description COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1
trembl
ID A0A067L5B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16904 PE=4 SV=1
Gene Ontology
ID GO:0005622
description cop9 signalosome complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10306: 89952-92924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_110 0.0 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
2 Hb_140833_010 0.0810715545 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
3 Hb_011013_010 0.1020139788 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
4 Hb_000661_140 0.1030844434 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
5 Hb_000976_260 0.1034041477 - - -
6 Hb_000012_020 0.1231847757 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
7 Hb_002450_040 0.1288673952 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
8 Hb_000000_360 0.1298667354 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
9 Hb_001195_260 0.1301813583 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
10 Hb_001142_050 0.1321619493 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
11 Hb_002639_150 0.1331221374 - - -
12 Hb_005588_030 0.1335696342 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
13 Hb_058972_010 0.134079905 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_007313_090 0.1358761471 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012725_070 0.1364417403 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
16 Hb_004128_200 0.1372335392 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
17 Hb_000138_130 0.137802894 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
18 Hb_010315_060 0.1382141352 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
19 Hb_005288_150 0.138761228 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
20 Hb_022132_050 0.1389137429 - - GTP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001373_110 Hb_001373_110 Hb_140833_010 Hb_140833_010 Hb_001373_110--Hb_140833_010 Hb_011013_010 Hb_011013_010 Hb_001373_110--Hb_011013_010 Hb_000661_140 Hb_000661_140 Hb_001373_110--Hb_000661_140 Hb_000976_260 Hb_000976_260 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_002450_040 Hb_002450_040 Hb_001373_110--Hb_002450_040 Hb_000000_360 Hb_000000_360 Hb_140833_010--Hb_000000_360 Hb_140833_010--Hb_000661_140 Hb_005588_030 Hb_005588_030 Hb_140833_010--Hb_005588_030 Hb_000694_040 Hb_000694_040 Hb_140833_010--Hb_000694_040 Hb_140833_010--Hb_011013_010 Hb_011013_010--Hb_000661_140 Hb_002639_150 Hb_002639_150 Hb_011013_010--Hb_002639_150 Hb_012725_070 Hb_012725_070 Hb_011013_010--Hb_012725_070 Hb_005288_150 Hb_005288_150 Hb_011013_010--Hb_005288_150 Hb_004531_070 Hb_004531_070 Hb_011013_010--Hb_004531_070 Hb_000661_140--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000661_140--Hb_000926_310 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_001142_050 Hb_001142_050 Hb_000976_260--Hb_001142_050 Hb_000976_260--Hb_000012_020 Hb_004363_010 Hb_004363_010 Hb_000976_260--Hb_004363_010 Hb_000261_250 Hb_000261_250 Hb_000976_260--Hb_000261_250 Hb_000976_260--Hb_000661_140 Hb_000976_260--Hb_002639_150 Hb_000012_020--Hb_001142_050 Hb_003044_100 Hb_003044_100 Hb_000012_020--Hb_003044_100 Hb_000290_020 Hb_000290_020 Hb_000012_020--Hb_000290_020 Hb_000012_020--Hb_002639_150 Hb_000156_140 Hb_000156_140 Hb_000012_020--Hb_000156_140 Hb_001377_030 Hb_001377_030 Hb_002450_040--Hb_001377_030 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_002450_040--Hb_007313_090 Hb_000297_110 Hb_000297_110 Hb_002450_040--Hb_000297_110 Hb_002450_040--Hb_000976_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4111 7.23525 32.2631 9.20286 16.1782 28.0557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.95839 17.7717 12.003 5.46776 6.01961

CAGE analysis