Hb_000297_110

Information

Type -
Description -
Location Contig297: 144919-145533
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07710g
description POPTRDRAFT_667669; hypothetical protein
nr
ID XP_012073005.1
description PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31091: 144726-145503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_110 0.0 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
2 Hb_000676_050 0.1024781387 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
3 Hb_010968_010 0.1032276904 - - Golgi snare 12 isoform 1 [Theobroma cacao]
4 Hb_002639_150 0.1053912778 - - -
5 Hb_001160_120 0.1076196044 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001040_040 0.1108188757 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
7 Hb_000789_100 0.1125055389 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
8 Hb_009252_100 0.1148201077 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
9 Hb_000012_020 0.1172811562 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
10 Hb_011013_010 0.1266275638 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_003020_010 0.1272866374 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
12 Hb_001621_170 0.1281112791 - - protein binding protein, putative [Ricinus communis]
13 Hb_000189_330 0.1293908252 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
14 Hb_002450_040 0.1302244884 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
15 Hb_007632_110 0.1306910934 - - chromatin regulatory protein sir2, putative [Ricinus communis]
16 Hb_001484_060 0.1307333813 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
17 Hb_000395_020 0.1310665602 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
18 Hb_000661_140 0.1318280421 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
19 Hb_000920_280 0.1325331298 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
20 Hb_000416_050 0.1329987187 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000297_110 Hb_000297_110 Hb_000676_050 Hb_000676_050 Hb_000297_110--Hb_000676_050 Hb_010968_010 Hb_010968_010 Hb_000297_110--Hb_010968_010 Hb_002639_150 Hb_002639_150 Hb_000297_110--Hb_002639_150 Hb_001160_120 Hb_001160_120 Hb_000297_110--Hb_001160_120 Hb_001040_040 Hb_001040_040 Hb_000297_110--Hb_001040_040 Hb_000789_100 Hb_000789_100 Hb_000297_110--Hb_000789_100 Hb_000676_050--Hb_010968_010 Hb_002784_050 Hb_002784_050 Hb_000676_050--Hb_002784_050 Hb_008887_050 Hb_008887_050 Hb_000676_050--Hb_008887_050 Hb_000933_150 Hb_000933_150 Hb_000676_050--Hb_000933_150 Hb_000676_050--Hb_002639_150 Hb_000205_120 Hb_000205_120 Hb_000676_050--Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_010968_010--Hb_002784_050 Hb_000920_280 Hb_000920_280 Hb_010968_010--Hb_000920_280 Hb_000661_140 Hb_000661_140 Hb_002639_150--Hb_000661_140 Hb_000926_310 Hb_000926_310 Hb_002639_150--Hb_000926_310 Hb_005288_150 Hb_005288_150 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_003687_230 Hb_003687_230 Hb_002639_150--Hb_003687_230 Hb_020367_050 Hb_020367_050 Hb_002639_150--Hb_020367_050 Hb_001050_010 Hb_001050_010 Hb_001160_120--Hb_001050_010 Hb_001160_120--Hb_001040_040 Hb_011915_010 Hb_011915_010 Hb_001160_120--Hb_011915_010 Hb_001001_020 Hb_001001_020 Hb_001160_120--Hb_001001_020 Hb_011609_170 Hb_011609_170 Hb_001160_120--Hb_011609_170 Hb_002783_120 Hb_002783_120 Hb_001160_120--Hb_002783_120 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_001040_040--Hb_011915_010 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_000923_040 Hb_000923_040 Hb_001040_040--Hb_000923_040 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_030827_030 Hb_030827_030 Hb_001040_040--Hb_030827_030 Hb_000789_100--Hb_010968_010 Hb_000789_100--Hb_000920_280 Hb_001484_060 Hb_001484_060 Hb_000789_100--Hb_001484_060 Hb_000789_100--Hb_000676_050 Hb_000482_110 Hb_000482_110 Hb_000789_100--Hb_000482_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2411 7.63779 25.1009 8.98189 22.8673 19.2129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4793 8.79931 10.207 5.76541 2.37842

CAGE analysis