Hb_000933_150

Information

Type -
Description -
Location Contig933: 228667-237135
Sequence    

Annotation

kegg
ID rcu:RCOM_1622080
description initiation factor 5a, putative
nr
ID XP_012067720.1
description PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
swissprot
ID F4I241
description Mitotic checkpoint protein BUB3.3 OS=Arabidopsis thaliana GN=BUB3.3 PE=2 SV=1
trembl
ID A0A067KYJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15663 PE=4 SV=1
Gene Ontology
ID GO:0003743
description mitotic checkpoint

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62907: 227344-228758 , PASA_asmbl_62908: 228938-230510 , PASA_asmbl_62909: 230529-232491 , PASA_asmbl_62910: 236124-236624 , PASA_asmbl_62911: 233912-237217 , PASA_asmbl_62913: 236820-237013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_150 0.0 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
2 Hb_008887_050 0.0806698629 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
3 Hb_000676_050 0.0862834308 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
4 Hb_006096_040 0.1006231459 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
5 Hb_001484_060 0.1018433777 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
6 Hb_010968_010 0.1061906385 - - Golgi snare 12 isoform 1 [Theobroma cacao]
7 Hb_031527_100 0.1068679975 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001014_010 0.1088505854 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
9 Hb_000042_210 0.1102439597 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
10 Hb_001124_120 0.1104915151 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
11 Hb_000205_120 0.1125604915 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
12 Hb_009838_090 0.112756145 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
13 Hb_000923_040 0.1133198149 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
14 Hb_143629_010 0.1136400866 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_005503_030 0.113902233 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
16 Hb_002687_140 0.1149135718 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
17 Hb_000666_110 0.1152969229 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
18 Hb_000529_080 0.1175728299 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
19 Hb_000920_280 0.1177782409 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
20 Hb_000538_020 0.1178499555 - - PREDICTED: autophagy protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000933_150 Hb_000933_150 Hb_008887_050 Hb_008887_050 Hb_000933_150--Hb_008887_050 Hb_000676_050 Hb_000676_050 Hb_000933_150--Hb_000676_050 Hb_006096_040 Hb_006096_040 Hb_000933_150--Hb_006096_040 Hb_001484_060 Hb_001484_060 Hb_000933_150--Hb_001484_060 Hb_010968_010 Hb_010968_010 Hb_000933_150--Hb_010968_010 Hb_031527_100 Hb_031527_100 Hb_000933_150--Hb_031527_100 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_008887_050--Hb_031939_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_000676_050--Hb_010968_010 Hb_002784_050 Hb_002784_050 Hb_000676_050--Hb_002784_050 Hb_000676_050--Hb_008887_050 Hb_002639_150 Hb_002639_150 Hb_000676_050--Hb_002639_150 Hb_000205_120 Hb_000205_120 Hb_000676_050--Hb_000205_120 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_000331_290 Hb_000331_290 Hb_006096_040--Hb_000331_290 Hb_000563_210 Hb_000563_210 Hb_001484_060--Hb_000563_210 Hb_001484_060--Hb_000676_050 Hb_001621_170 Hb_001621_170 Hb_001484_060--Hb_001621_170 Hb_001124_120 Hb_001124_120 Hb_001484_060--Hb_001124_120 Hb_002349_040 Hb_002349_040 Hb_001484_060--Hb_002349_040 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_010968_010--Hb_002784_050 Hb_000920_280 Hb_000920_280 Hb_010968_010--Hb_000920_280 Hb_004837_190 Hb_004837_190 Hb_031527_100--Hb_004837_190 Hb_031527_100--Hb_005503_030 Hb_054865_100 Hb_054865_100 Hb_031527_100--Hb_054865_100 Hb_031527_100--Hb_008887_050 Hb_000327_120 Hb_000327_120 Hb_031527_100--Hb_000327_120 Hb_000477_030 Hb_000477_030 Hb_031527_100--Hb_000477_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.6464 7.27908 19.3011 7.22062 45.7526 21.7481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6364 16.4464 12.7149 8.04566 4.94651

CAGE analysis