Hb_000331_290

Information

Type -
Description -
Location Contig331: 246006-249575
Sequence    

Annotation

kegg
ID rcu:RCOM_1506880
description hypothetical protein
nr
ID XP_002511223.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAJ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506880 PE=4 SV=1
Gene Ontology
ID GO:0007059
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002349_040 0.1162171875 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
3 Hb_006096_040 0.1235369999 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
4 Hb_006634_040 0.1353915961 - - hypothetical protein VITISV_030841 [Vitis vinifera]
5 Hb_001484_060 0.1367314811 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
6 Hb_001124_120 0.1393682345 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
7 Hb_007086_010 0.1401816812 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
8 Hb_001221_320 0.1402957634 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
9 Hb_009838_090 0.140566918 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
10 Hb_006816_220 0.1425976337 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
11 Hb_009803_040 0.1433175057 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
12 Hb_004046_040 0.1456135077 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
13 Hb_002045_040 0.1459085253 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_000789_090 0.1467457541 - - hypothetical protein 17 [Hevea brasiliensis]
15 Hb_001221_410 0.1477561929 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
16 Hb_000933_150 0.149367566 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
17 Hb_094022_010 0.1521473316 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
18 Hb_002232_130 0.1526304203 - - -
19 Hb_001135_050 0.1527741627 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
20 Hb_000179_170 0.1548765868 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_290 Hb_000331_290 Hb_002349_040 Hb_002349_040 Hb_000331_290--Hb_002349_040 Hb_006096_040 Hb_006096_040 Hb_000331_290--Hb_006096_040 Hb_006634_040 Hb_006634_040 Hb_000331_290--Hb_006634_040 Hb_001484_060 Hb_001484_060 Hb_000331_290--Hb_001484_060 Hb_001124_120 Hb_001124_120 Hb_000331_290--Hb_001124_120 Hb_007086_010 Hb_007086_010 Hb_000331_290--Hb_007086_010 Hb_002349_040--Hb_001124_120 Hb_150360_030 Hb_150360_030 Hb_002349_040--Hb_150360_030 Hb_001221_320 Hb_001221_320 Hb_002349_040--Hb_001221_320 Hb_000109_090 Hb_000109_090 Hb_002349_040--Hb_000109_090 Hb_000053_130 Hb_000053_130 Hb_002349_040--Hb_000053_130 Hb_004310_130 Hb_004310_130 Hb_002349_040--Hb_004310_130 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_000933_150 Hb_000933_150 Hb_006096_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_009803_040 Hb_009803_040 Hb_006634_040--Hb_009803_040 Hb_006634_040--Hb_000933_150 Hb_005656_210 Hb_005656_210 Hb_006634_040--Hb_005656_210 Hb_000661_160 Hb_000661_160 Hb_006634_040--Hb_000661_160 Hb_003788_050 Hb_003788_050 Hb_006634_040--Hb_003788_050 Hb_006634_040--Hb_001484_060 Hb_000563_210 Hb_000563_210 Hb_001484_060--Hb_000563_210 Hb_001484_060--Hb_000676_050 Hb_001621_170 Hb_001621_170 Hb_001484_060--Hb_001621_170 Hb_001484_060--Hb_000933_150 Hb_001484_060--Hb_001124_120 Hb_001484_060--Hb_002349_040 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_001124_120--Hb_150360_030 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_031939_010 Hb_031939_010 Hb_001124_120--Hb_031939_010 Hb_007218_080 Hb_007218_080 Hb_001124_120--Hb_007218_080 Hb_030385_010 Hb_030385_010 Hb_007086_010--Hb_030385_010 Hb_156825_010 Hb_156825_010 Hb_007086_010--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_007086_010--Hb_001380_020 Hb_001009_040 Hb_001009_040 Hb_007086_010--Hb_001009_040 Hb_005389_150 Hb_005389_150 Hb_007086_010--Hb_005389_150 Hb_000270_630 Hb_000270_630 Hb_007086_010--Hb_000270_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96618 0.381902 1.1691 0.850518 2.5438 1.10678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.57275 1.49244 0.560567 1.03274 0.3641

CAGE analysis