Hb_006096_040

Information

Type -
Description -
Location Contig6096: 38749-42251
Sequence    

Annotation

kegg
ID cit:102623606
description COP9 signalosome complex subunit 8-like
nr
ID XP_012065643.1
description PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
swissprot
ID P43255
description COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1
trembl
ID A0A067L5B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16904 PE=4 SV=1
Gene Ontology
ID GO:0009987
description cop9 signalosome complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50894: 38610-41711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006096_040 0.0 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
2 Hb_004046_040 0.0572107315 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
3 Hb_000933_150 0.1006231459 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
4 Hb_000676_050 0.1164604186 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
5 Hb_002687_140 0.1204897708 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
6 Hb_000482_110 0.1223315804 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_000331_290 0.1235369999 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004032_060 0.1245618605 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
9 Hb_000307_170 0.1297184263 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
10 Hb_010968_010 0.1300308541 - - Golgi snare 12 isoform 1 [Theobroma cacao]
11 Hb_000529_080 0.1306435387 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
12 Hb_000538_020 0.1334976965 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
13 Hb_001951_260 0.1335578933 - - 60S ribosomal protein L32, putative [Ricinus communis]
14 Hb_001348_070 0.1338635257 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_000933_050 0.136526592 - - protein binding protein, putative [Ricinus communis]
16 Hb_000001_110 0.1365792394 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009838_090 0.1373246845 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
18 Hb_000789_090 0.137413096 - - hypothetical protein 17 [Hevea brasiliensis]
19 Hb_003752_080 0.1378717513 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
20 Hb_094022_010 0.1379246534 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]

Gene co-expression network

sample Hb_006096_040 Hb_006096_040 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_000933_150 Hb_000933_150 Hb_006096_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_000331_290 Hb_000331_290 Hb_006096_040--Hb_000331_290 Hb_006501_150 Hb_006501_150 Hb_004046_040--Hb_006501_150 Hb_005545_030 Hb_005545_030 Hb_004046_040--Hb_005545_030 Hb_000789_090 Hb_000789_090 Hb_004046_040--Hb_000789_090 Hb_002681_040 Hb_002681_040 Hb_004046_040--Hb_002681_040 Hb_001405_050 Hb_001405_050 Hb_004046_040--Hb_001405_050 Hb_008887_050 Hb_008887_050 Hb_000933_150--Hb_008887_050 Hb_000933_150--Hb_000676_050 Hb_001484_060 Hb_001484_060 Hb_000933_150--Hb_001484_060 Hb_010968_010 Hb_010968_010 Hb_000933_150--Hb_010968_010 Hb_031527_100 Hb_031527_100 Hb_000933_150--Hb_031527_100 Hb_000676_050--Hb_010968_010 Hb_002784_050 Hb_002784_050 Hb_000676_050--Hb_002784_050 Hb_000676_050--Hb_008887_050 Hb_002639_150 Hb_002639_150 Hb_000676_050--Hb_002639_150 Hb_000205_120 Hb_000205_120 Hb_000676_050--Hb_000205_120 Hb_001348_070 Hb_001348_070 Hb_002687_140--Hb_001348_070 Hb_003752_080 Hb_003752_080 Hb_002687_140--Hb_003752_080 Hb_000808_250 Hb_000808_250 Hb_002687_140--Hb_000808_250 Hb_003849_060 Hb_003849_060 Hb_002687_140--Hb_003849_060 Hb_007007_050 Hb_007007_050 Hb_002687_140--Hb_007007_050 Hb_001352_090 Hb_001352_090 Hb_002687_140--Hb_001352_090 Hb_002400_390 Hb_002400_390 Hb_000482_110--Hb_002400_390 Hb_004032_060 Hb_004032_060 Hb_000482_110--Hb_004032_060 Hb_004447_030 Hb_004447_030 Hb_000482_110--Hb_004447_030 Hb_000265_150 Hb_000265_150 Hb_000482_110--Hb_000265_150 Hb_000920_280 Hb_000920_280 Hb_000482_110--Hb_000920_280 Hb_000482_110--Hb_010968_010 Hb_002349_040 Hb_002349_040 Hb_000331_290--Hb_002349_040 Hb_006634_040 Hb_006634_040 Hb_000331_290--Hb_006634_040 Hb_000331_290--Hb_001484_060 Hb_001124_120 Hb_001124_120 Hb_000331_290--Hb_001124_120 Hb_007086_010 Hb_007086_010 Hb_000331_290--Hb_007086_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4021 1.07497 2.28996 0.830299 5.48515 2.20092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7097 3.18217 0.936066 1.03285 0.34607

CAGE analysis