Hb_002400_390

Information

Type -
Description -
Location Contig2400: 268308-271012
Sequence    

Annotation

kegg
ID vvi:100255110
description 60S ribosomal protein L4
nr
ID XP_002274975.1
description PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
swissprot
ID Q9SF40
description 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1
trembl
ID F6HQV3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g03200 PE=4 SV=1
Gene Ontology
ID GO:0005618
description 60s ribosomal protein l4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25189: 269725-269957 , PASA_asmbl_25191: 271647-272519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_390 0.0 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
2 Hb_000482_110 0.0918930139 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_004096_170 0.1067708687 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
4 Hb_000265_150 0.1079406347 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
5 Hb_008406_160 0.1104349132 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
6 Hb_004722_060 0.1106409173 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
7 Hb_005015_010 0.1139169637 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
8 Hb_000258_410 0.1145785383 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
9 Hb_010883_210 0.1148092569 - - PREDICTED: selenoprotein K [Jatropha curcas]
10 Hb_153150_010 0.1155831492 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
11 Hb_007441_340 0.1187988098 - - protein with unknown function [Ricinus communis]
12 Hb_008725_250 0.1191674119 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_005714_040 0.1195568736 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012305_070 0.1202553761 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002249_140 0.1203428905 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
16 Hb_000002_330 0.1214264083 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
17 Hb_003688_100 0.1224956644 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
18 Hb_005527_050 0.1240950467 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
19 Hb_001767_100 0.124379785 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
20 Hb_005333_020 0.1245096489 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002400_390 Hb_002400_390 Hb_000482_110 Hb_000482_110 Hb_002400_390--Hb_000482_110 Hb_004096_170 Hb_004096_170 Hb_002400_390--Hb_004096_170 Hb_000265_150 Hb_000265_150 Hb_002400_390--Hb_000265_150 Hb_008406_160 Hb_008406_160 Hb_002400_390--Hb_008406_160 Hb_004722_060 Hb_004722_060 Hb_002400_390--Hb_004722_060 Hb_005015_010 Hb_005015_010 Hb_002400_390--Hb_005015_010 Hb_004032_060 Hb_004032_060 Hb_000482_110--Hb_004032_060 Hb_004447_030 Hb_004447_030 Hb_000482_110--Hb_004447_030 Hb_000482_110--Hb_000265_150 Hb_000920_280 Hb_000920_280 Hb_000482_110--Hb_000920_280 Hb_010968_010 Hb_010968_010 Hb_000482_110--Hb_010968_010 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_003453_020 Hb_003453_020 Hb_004096_170--Hb_003453_020 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_000205_120 Hb_000205_120 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_000265_150--Hb_004722_060 Hb_000529_080 Hb_000529_080 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_000265_150--Hb_008406_160 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_008406_160--Hb_003453_020 Hb_015941_030 Hb_015941_030 Hb_008406_160--Hb_015941_030 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_003688_100 Hb_003688_100 Hb_004722_060--Hb_003688_100 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080 Hb_000188_190 Hb_000188_190 Hb_005015_010--Hb_000188_190 Hb_005015_010--Hb_004096_170 Hb_000183_070 Hb_000183_070 Hb_005015_010--Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_005015_010--Hb_005714_040 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_004374_010 Hb_004374_010 Hb_005015_010--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9963 14.573 5.54579 5.00227 41.3995 21.512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3906 19.1987 9.69294 5.86471 1.34781

CAGE analysis