Hb_005015_010

Information

Type -
Description -
Location Contig5015: 3266-6947
Sequence    

Annotation

kegg
ID rcu:RCOM_0431540
description hypothetical protein
nr
ID XP_012075238.1
description PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
swissprot
ID Q5ZID2
description Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1
trembl
ID B9STA9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0431540 PE=4 SV=1
Gene Ontology
ID GO:0005737
description programmed cell death protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45851: 4476-6098 , PASA_asmbl_45852: 6199-6806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_010 0.0 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
2 Hb_000188_190 0.0877847893 - - -
3 Hb_004096_170 0.0933798715 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
4 Hb_000183_070 0.0940961287 - - -
5 Hb_005714_040 0.0946270096 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009801_010 0.0995950741 - - ATPase inhibitor, putative [Ricinus communis]
7 Hb_004374_010 0.1038599682 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
8 Hb_000015_010 0.1064622574 - - -
9 Hb_000062_230 0.1076880019 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
10 Hb_011537_040 0.1081213344 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
11 Hb_004813_010 0.1092423774 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_002044_090 0.1099267711 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
13 Hb_002276_190 0.1104298813 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
14 Hb_000768_030 0.1120048699 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
15 Hb_002400_390 0.1139169637 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
16 Hb_001776_080 0.1164562813 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
17 Hb_000179_250 0.117555977 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
18 Hb_001956_120 0.1177781403 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006452_190 0.1178129914 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
20 Hb_001514_200 0.1188015899 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]

Gene co-expression network

sample Hb_005015_010 Hb_005015_010 Hb_000188_190 Hb_000188_190 Hb_005015_010--Hb_000188_190 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_000183_070 Hb_000183_070 Hb_005015_010--Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_005015_010--Hb_005714_040 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_004374_010 Hb_004374_010 Hb_005015_010--Hb_004374_010 Hb_000015_010 Hb_000015_010 Hb_000188_190--Hb_000015_010 Hb_000188_190--Hb_004374_010 Hb_000188_190--Hb_005714_040 Hb_004032_460 Hb_004032_460 Hb_000188_190--Hb_004032_460 Hb_002728_020 Hb_002728_020 Hb_000188_190--Hb_002728_020 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_003453_020 Hb_003453_020 Hb_004096_170--Hb_003453_020 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_000183_070--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_005714_040--Hb_005389_140 Hb_000590_090 Hb_000590_090 Hb_005714_040--Hb_000590_090 Hb_005714_040--Hb_006452_190 Hb_001956_120 Hb_001956_120 Hb_009801_010--Hb_001956_120 Hb_000392_280 Hb_000392_280 Hb_009801_010--Hb_000392_280 Hb_000307_170 Hb_000307_170 Hb_009801_010--Hb_000307_170 Hb_000976_270 Hb_000976_270 Hb_009801_010--Hb_000976_270 Hb_003581_110 Hb_003581_110 Hb_009801_010--Hb_003581_110 Hb_004374_010--Hb_001956_120 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.0286 12.7604 7.98448 5.57222 100.697 51.6814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.5244 35.3537 17.3942 9.80181 4.31538

CAGE analysis