Hb_009801_010

Information

Type -
Description -
Location Contig9801: 4222-7486
Sequence    

Annotation

kegg
ID rcu:RCOM_1540860
description ATPase inhibitor, putative
nr
ID XP_002515764.1
description ATPase inhibitor, putative [Ricinus communis]
swissprot
ID Q9ZUX4
description Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana GN=At2g27730 PE=1 SV=1
trembl
ID B9RPU5
description ATPase inhibitor, putative OS=Ricinus communis GN=RCOM_1540860 PE=4 SV=1
Gene Ontology
ID GO:0005739
description f1f0-atpase inhibitor protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64382: 4232-7419
cDNA
(Sanger)
(ID:Location)		 046_J23.ab1: 4196-7201 , 049_H06.ab1: 4205-7405 , 049_K13.ab1: 4211-7401

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009801_010 0.0 - - ATPase inhibitor, putative [Ricinus communis]
2 Hb_001956_120 0.0906979797 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005015_010 0.0995950741 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
4 Hb_000392_280 0.1042333462 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
5 Hb_000307_170 0.1046422255 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
6 Hb_000976_270 0.1075246632 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
7 Hb_003581_110 0.1089162368 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
8 Hb_002276_190 0.1100212109 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
9 Hb_000188_190 0.1142632954 - - -
10 Hb_001016_060 0.1165257483 - - conserved hypothetical protein [Ricinus communis]
11 Hb_164010_020 0.1171534236 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
12 Hb_007534_040 0.1179322443 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
13 Hb_004374_010 0.119452138 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
14 Hb_044662_040 0.1204099279 - - -
15 Hb_000347_080 0.1208211266 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
16 Hb_179511_010 0.1209226026 - - -
17 Hb_001663_110 0.1210846657 - - RNA binding protein, putative [Ricinus communis]
18 Hb_000363_340 0.1213888687 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
19 Hb_001623_580 0.1218462551 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
20 Hb_000264_060 0.121865565 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_009801_010 Hb_009801_010 Hb_001956_120 Hb_001956_120 Hb_009801_010--Hb_001956_120 Hb_005015_010 Hb_005015_010 Hb_009801_010--Hb_005015_010 Hb_000392_280 Hb_000392_280 Hb_009801_010--Hb_000392_280 Hb_000307_170 Hb_000307_170 Hb_009801_010--Hb_000307_170 Hb_000976_270 Hb_000976_270 Hb_009801_010--Hb_000976_270 Hb_003581_110 Hb_003581_110 Hb_009801_010--Hb_003581_110 Hb_004374_010 Hb_004374_010 Hb_001956_120--Hb_004374_010 Hb_000347_080 Hb_000347_080 Hb_001956_120--Hb_000347_080 Hb_001956_120--Hb_000976_270 Hb_011537_040 Hb_011537_040 Hb_001956_120--Hb_011537_040 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001663_110 Hb_001663_110 Hb_001956_120--Hb_001663_110 Hb_000188_190 Hb_000188_190 Hb_005015_010--Hb_000188_190 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_000183_070 Hb_000183_070 Hb_005015_010--Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_005015_010--Hb_005714_040 Hb_005015_010--Hb_004374_010 Hb_000363_340 Hb_000363_340 Hb_000392_280--Hb_000363_340 Hb_000173_210 Hb_000173_210 Hb_000392_280--Hb_000173_210 Hb_000300_540 Hb_000300_540 Hb_000392_280--Hb_000300_540 Hb_002025_140 Hb_002025_140 Hb_000392_280--Hb_002025_140 Hb_019871_020 Hb_019871_020 Hb_000392_280--Hb_019871_020 Hb_000392_280--Hb_003581_110 Hb_004032_060 Hb_004032_060 Hb_000307_170--Hb_004032_060 Hb_004032_050 Hb_004032_050 Hb_000307_170--Hb_004032_050 Hb_002276_190 Hb_002276_190 Hb_000307_170--Hb_002276_190 Hb_006261_040 Hb_006261_040 Hb_000307_170--Hb_006261_040 Hb_006501_150 Hb_006501_150 Hb_000307_170--Hb_006501_150 Hb_000976_270--Hb_001663_110 Hb_000205_120 Hb_000205_120 Hb_000976_270--Hb_000205_120 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_004447_030 Hb_004447_030 Hb_000976_270--Hb_004447_030 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_001016_060 Hb_001016_060 Hb_003581_110--Hb_001016_060 Hb_179511_010 Hb_179511_010 Hb_003581_110--Hb_179511_010 Hb_045502_010 Hb_045502_010 Hb_003581_110--Hb_045502_010 Hb_002405_020 Hb_002405_020 Hb_003581_110--Hb_002405_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
663.01 108.332 104.678 82.5107 782.02 528.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
303.402 297.206 65.8647 71.4549 35.8028

CAGE analysis