Hb_006261_040

Information

Type -
Description -
Location Contig6261: 56264-60035
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12270g
description POPTRDRAFT_825338; hypothetical protein
nr
ID XP_012087870.1
description PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID A0A067JY32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25023 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51671: 56301-59987 , PASA_asmbl_51672: 56301-60064
cDNA
(Sanger)
(ID:Location)		 035_F22.ab1: 56301-58407 , 042_M02.ab1: 56301-58343

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006261_040 0.0 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
2 Hb_017098_030 0.0942262535 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
3 Hb_000345_560 0.0976655664 - - -
4 Hb_012675_090 0.0979960903 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
5 Hb_004502_030 0.0980762717 - - unknown [Populus trichocarpa]
6 Hb_033080_010 0.1020196328 - - -
7 Hb_001437_300 0.1051965875 - - -
8 Hb_004032_050 0.1057250956 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
9 Hb_001623_580 0.1060435576 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
10 Hb_000307_170 0.1063014558 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
11 Hb_003126_040 0.1089820366 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006501_150 0.1109278874 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004525_100 0.1154489841 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
14 Hb_000976_270 0.1186424713 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
15 Hb_010810_050 0.1196433653 - - hypothetical protein [Cleome spinosa]
16 Hb_004374_010 0.1197744925 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
17 Hb_000284_200 0.1202720245 - - -
18 Hb_143766_090 0.120472238 - - 60S ribosomal protein L31B [Hevea brasiliensis]
19 Hb_000003_090 0.1208779471 - - -
20 Hb_002276_190 0.1223230264 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]

Gene co-expression network

sample Hb_006261_040 Hb_006261_040 Hb_017098_030 Hb_017098_030 Hb_006261_040--Hb_017098_030 Hb_000345_560 Hb_000345_560 Hb_006261_040--Hb_000345_560 Hb_012675_090 Hb_012675_090 Hb_006261_040--Hb_012675_090 Hb_004502_030 Hb_004502_030 Hb_006261_040--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006261_040--Hb_033080_010 Hb_001437_300 Hb_001437_300 Hb_006261_040--Hb_001437_300 Hb_004374_010 Hb_004374_010 Hb_017098_030--Hb_004374_010 Hb_003055_050 Hb_003055_050 Hb_017098_030--Hb_003055_050 Hb_017098_030--Hb_001437_300 Hb_002851_060 Hb_002851_060 Hb_017098_030--Hb_002851_060 Hb_017098_030--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000345_560--Hb_007992_030 Hb_000345_560--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_000345_560--Hb_003055_050 Hb_168918_020 Hb_168918_020 Hb_000345_560--Hb_168918_020 Hb_010128_130 Hb_010128_130 Hb_012675_090--Hb_010128_130 Hb_003126_040 Hb_003126_040 Hb_012675_090--Hb_003126_040 Hb_143766_090 Hb_143766_090 Hb_012675_090--Hb_143766_090 Hb_001741_140 Hb_001741_140 Hb_012675_090--Hb_001741_140 Hb_001629_110 Hb_001629_110 Hb_012675_090--Hb_001629_110 Hb_010810_050 Hb_010810_050 Hb_012675_090--Hb_010810_050 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_005333_040 Hb_005333_040 Hb_033080_010--Hb_005333_040 Hb_006501_150 Hb_006501_150 Hb_033080_010--Hb_006501_150 Hb_000329_690 Hb_000329_690 Hb_033080_010--Hb_000329_690 Hb_033080_010--Hb_000345_560 Hb_033080_010--Hb_007992_030 Hb_001437_300--Hb_004374_010 Hb_000183_070 Hb_000183_070 Hb_001437_300--Hb_000183_070 Hb_001437_300--Hb_006501_150 Hb_001437_300--Hb_007992_030 Hb_001437_300--Hb_001514_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.9996 3.90993 10.4989 3.39655 48.9447 40.3047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0508 30.5484 9.63097 4.51552 7.82237

CAGE analysis