Hb_005333_040

Information

Type -
Description -
Location Contig5333: 21184-25051
Sequence    

Annotation

kegg
ID pmum:103319612
description dnaJ homolog subfamily C member 5
nr
ID XP_008219392.1
description PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
swissprot
ID B2TLZ8
description Chaperone protein DnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1
trembl
ID M5XGT5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011196mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47460: 24919-25133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_040 0.0 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
2 Hb_033080_010 0.0811132501 - - -
3 Hb_006501_150 0.0881559002 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000270_840 0.092786592 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
5 Hb_000538_020 0.0945904897 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
6 Hb_000329_690 0.1037435859 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
7 Hb_004970_200 0.1064850718 - - serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_002942_020 0.1074902742 - - nucleotide binding protein, putative [Ricinus communis]
9 Hb_000268_090 0.1080930324 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
10 Hb_004813_010 0.1090299037 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_005928_060 0.1097043794 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
12 Hb_168918_020 0.1111288756 - - pectin acetylesterase, putative [Ricinus communis]
13 Hb_000392_270 0.1115172208 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
14 Hb_004884_220 0.1127977609 - - hypothetical protein 29 [Hevea brasiliensis]
15 Hb_000107_390 0.1131082948 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
16 Hb_005527_050 0.1137493708 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
17 Hb_004204_030 0.114098222 - - unknown [Populus trichocarpa]
18 Hb_000270_360 0.1141319483 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
19 Hb_004096_170 0.114963639 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
20 Hb_001804_040 0.115800717 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005333_040 Hb_005333_040 Hb_033080_010 Hb_033080_010 Hb_005333_040--Hb_033080_010 Hb_006501_150 Hb_006501_150 Hb_005333_040--Hb_006501_150 Hb_000270_840 Hb_000270_840 Hb_005333_040--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_005333_040--Hb_000538_020 Hb_000329_690 Hb_000329_690 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200 Hb_033080_010--Hb_006501_150 Hb_033080_010--Hb_000329_690 Hb_000345_560 Hb_000345_560 Hb_033080_010--Hb_000345_560 Hb_006261_040 Hb_006261_040 Hb_033080_010--Hb_006261_040 Hb_007992_030 Hb_007992_030 Hb_033080_010--Hb_007992_030 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_006501_150--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_006501_150--Hb_004502_030 Hb_000183_070 Hb_000183_070 Hb_006501_150--Hb_000183_070 Hb_000270_840--Hb_000538_020 Hb_000270_360 Hb_000270_360 Hb_000270_840--Hb_000270_360 Hb_000905_190 Hb_000905_190 Hb_000270_840--Hb_000905_190 Hb_000392_270 Hb_000392_270 Hb_000270_840--Hb_000392_270 Hb_002997_170 Hb_002997_170 Hb_000270_840--Hb_002997_170 Hb_001369_650 Hb_001369_650 Hb_000270_840--Hb_001369_650 Hb_000107_390 Hb_000107_390 Hb_000538_020--Hb_000107_390 Hb_000666_110 Hb_000666_110 Hb_000538_020--Hb_000666_110 Hb_004722_060 Hb_004722_060 Hb_000538_020--Hb_004722_060 Hb_019962_030 Hb_019962_030 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_168918_020 Hb_168918_020 Hb_000329_690--Hb_168918_020 Hb_000329_690--Hb_000107_390 Hb_004884_220 Hb_004884_220 Hb_000329_690--Hb_004884_220 Hb_000329_690--Hb_000345_560 Hb_001754_150 Hb_001754_150 Hb_000329_690--Hb_001754_150 Hb_002973_080 Hb_002973_080 Hb_004970_200--Hb_002973_080 Hb_002659_140 Hb_002659_140 Hb_004970_200--Hb_002659_140 Hb_004970_200--Hb_000107_390 Hb_004970_200--Hb_000538_020 Hb_001001_160 Hb_001001_160 Hb_004970_200--Hb_001001_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.845 13.498 18.1589 6.70139 104.058 55.883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.1434 73.9098 43.674 9.18862 9.5781

CAGE analysis