Hb_000270_360

Information

Type -
Description -
Location Contig270: 276009-281015
Sequence    

Annotation

kegg
ID rcu:RCOM_1512850
description hypothetical protein
nr
ID XP_012080159.1
description PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28197: 276072-277782 , PASA_asmbl_28199: 279845-280055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_360 0.0 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
2 Hb_000270_840 0.0844544954 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
3 Hb_002942_020 0.0883822373 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_006501_150 0.1000881061 - - conserved hypothetical protein [Ricinus communis]
5 Hb_027892_060 0.1032868246 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
6 Hb_007441_340 0.1054904265 - - protein with unknown function [Ricinus communis]
7 Hb_012675_090 0.1092326791 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
8 Hb_000268_090 0.1095396048 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
9 Hb_004502_030 0.1103019941 - - unknown [Populus trichocarpa]
10 Hb_000538_020 0.1107189662 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
11 Hb_005333_040 0.1141319483 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
12 Hb_000172_120 0.1168778864 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
13 Hb_000714_030 0.1170130528 - - Nucleosome assembly [Gossypium arboreum]
14 Hb_008406_160 0.1218136051 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
15 Hb_000905_190 0.1246786518 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
16 Hb_004032_060 0.1251033213 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
17 Hb_003106_130 0.1252887798 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
18 Hb_006261_040 0.1254710675 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
19 Hb_143766_090 0.1262609219 - - 60S ribosomal protein L31B [Hevea brasiliensis]
20 Hb_000392_270 0.1266673446 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_360 Hb_000270_360 Hb_000270_840 Hb_000270_840 Hb_000270_360--Hb_000270_840 Hb_002942_020 Hb_002942_020 Hb_000270_360--Hb_002942_020 Hb_006501_150 Hb_006501_150 Hb_000270_360--Hb_006501_150 Hb_027892_060 Hb_027892_060 Hb_000270_360--Hb_027892_060 Hb_007441_340 Hb_007441_340 Hb_000270_360--Hb_007441_340 Hb_012675_090 Hb_012675_090 Hb_000270_360--Hb_012675_090 Hb_000538_020 Hb_000538_020 Hb_000270_840--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000270_840--Hb_000905_190 Hb_000392_270 Hb_000392_270 Hb_000270_840--Hb_000392_270 Hb_002997_170 Hb_002997_170 Hb_000270_840--Hb_002997_170 Hb_001369_650 Hb_001369_650 Hb_000270_840--Hb_001369_650 Hb_002942_020--Hb_027892_060 Hb_003125_040 Hb_003125_040 Hb_002942_020--Hb_003125_040 Hb_118419_020 Hb_118419_020 Hb_002942_020--Hb_118419_020 Hb_003540_040 Hb_003540_040 Hb_002942_020--Hb_003540_040 Hb_168918_020 Hb_168918_020 Hb_002942_020--Hb_168918_020 Hb_002942_020--Hb_000905_190 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_006501_150--Hb_001514_020 Hb_005333_040 Hb_005333_040 Hb_006501_150--Hb_005333_040 Hb_004502_030 Hb_004502_030 Hb_006501_150--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006501_150--Hb_033080_010 Hb_000183_070 Hb_000183_070 Hb_006501_150--Hb_000183_070 Hb_017895_050 Hb_017895_050 Hb_027892_060--Hb_017895_050 Hb_033491_010 Hb_033491_010 Hb_027892_060--Hb_033491_010 Hb_118977_020 Hb_118977_020 Hb_027892_060--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_027892_060--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_027892_060--Hb_001369_060 Hb_000172_120 Hb_000172_120 Hb_007441_340--Hb_000172_120 Hb_004096_170 Hb_004096_170 Hb_007441_340--Hb_004096_170 Hb_003453_020 Hb_003453_020 Hb_007441_340--Hb_003453_020 Hb_002400_220 Hb_002400_220 Hb_007441_340--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_007441_340--Hb_001269_150 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_010128_130 Hb_010128_130 Hb_012675_090--Hb_010128_130 Hb_003126_040 Hb_003126_040 Hb_012675_090--Hb_003126_040 Hb_012675_090--Hb_143766_090 Hb_001741_140 Hb_001741_140 Hb_012675_090--Hb_001741_140 Hb_001629_110 Hb_001629_110 Hb_012675_090--Hb_001629_110 Hb_010810_050 Hb_010810_050 Hb_012675_090--Hb_010810_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0624 6.05291 12.5374 3.94507 35.7552 32.2579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0251 28.9328 9.83582 3.77952 5.64115

CAGE analysis