Hb_003126_040

Information

Type -
Description -
Location Contig3126: 22090-23555
Sequence    

Annotation

kegg
ID rcu:RCOM_0572490
description hypothetical protein
nr
ID XP_002529640.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0572490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33085: 22217-23969
cDNA
(Sanger)
(ID:Location)		 051_O21.ab1: 22652-23926

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000290_020 0.0780530248 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
3 Hb_012675_090 0.0788582513 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
4 Hb_004525_100 0.079396876 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
5 Hb_004044_020 0.0836109836 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
6 Hb_003086_070 0.0837421664 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
7 Hb_000088_200 0.0841135482 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_005928_060 0.0890129946 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
9 Hb_143629_010 0.0891455422 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_000072_140 0.0938051329 - - -
11 Hb_004032_050 0.0941449524 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
12 Hb_008887_050 0.0946556084 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
13 Hb_010128_130 0.0951345546 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
14 Hb_001352_090 0.0981972255 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
15 Hb_000997_020 0.0982119009 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
16 Hb_002687_140 0.0985913039 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
17 Hb_000640_230 0.0986923489 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006623_020 0.0987523154 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
19 Hb_001741_140 0.0989197953 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
20 Hb_001348_070 0.0993482019 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003126_040 Hb_003126_040 Hb_000290_020 Hb_000290_020 Hb_003126_040--Hb_000290_020 Hb_012675_090 Hb_012675_090 Hb_003126_040--Hb_012675_090 Hb_004525_100 Hb_004525_100 Hb_003126_040--Hb_004525_100 Hb_004044_020 Hb_004044_020 Hb_003126_040--Hb_004044_020 Hb_003086_070 Hb_003086_070 Hb_003126_040--Hb_003086_070 Hb_000088_200 Hb_000088_200 Hb_003126_040--Hb_000088_200 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_010128_130 Hb_010128_130 Hb_012675_090--Hb_010128_130 Hb_143766_090 Hb_143766_090 Hb_012675_090--Hb_143766_090 Hb_001741_140 Hb_001741_140 Hb_012675_090--Hb_001741_140 Hb_001629_110 Hb_001629_110 Hb_012675_090--Hb_001629_110 Hb_010810_050 Hb_010810_050 Hb_012675_090--Hb_010810_050 Hb_004525_100--Hb_000088_200 Hb_000236_280 Hb_000236_280 Hb_004525_100--Hb_000236_280 Hb_004525_100--Hb_000617_220 Hb_004525_100--Hb_004044_020 Hb_000976_270 Hb_000976_270 Hb_004525_100--Hb_000976_270 Hb_004044_020--Hb_000088_200 Hb_000684_420 Hb_000684_420 Hb_004044_020--Hb_000684_420 Hb_004044_020--Hb_000236_280 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_002154_120 Hb_002154_120 Hb_003086_070--Hb_002154_120 Hb_003086_070--Hb_000290_020 Hb_001348_070 Hb_001348_070 Hb_003086_070--Hb_001348_070 Hb_000690_130 Hb_000690_130 Hb_003086_070--Hb_000690_130 Hb_005928_060 Hb_005928_060 Hb_003086_070--Hb_005928_060 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5503 4.7027 7.22557 2.7204 23.7062 16.782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.40564 15.0254 5.79701 4.86729 3.77221

CAGE analysis