Hb_012675_090

Information

Type -
Description -
Location Contig12675: 54962-58937
Sequence    

Annotation

kegg
ID cit:102621370
description DNA-directed RNA polymerase II subunit 4-like
nr
ID XP_006494737.1
description PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
swissprot
ID O48890
description DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana GN=NRPB4 PE=1 SV=1
trembl
ID B9H5K4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08690g PE=4 SV=1
Gene Ontology
ID GO:0000166
description dna-directed rna polymerase ii subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08081: 54962-59025
cDNA
(Sanger)
(ID:Location)		 010_J11.ab1: 55009-59025

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012675_090 0.0 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
2 Hb_010128_130 0.0783072142 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
3 Hb_003126_040 0.0788582513 - - conserved hypothetical protein [Ricinus communis]
4 Hb_143766_090 0.0867124499 - - 60S ribosomal protein L31B [Hevea brasiliensis]
5 Hb_001741_140 0.0886597381 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_001629_110 0.0950630681 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
7 Hb_010810_050 0.0965347675 - - hypothetical protein [Cleome spinosa]
8 Hb_000107_050 0.097494213 - - 60S ribosomal protein L9, putative [Ricinus communis]
9 Hb_006261_040 0.0979960903 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
10 Hb_000538_020 0.09826403 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
11 Hb_001348_070 0.0983464678 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_002997_170 0.0986608237 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
13 Hb_005928_060 0.0987252205 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
14 Hb_000085_060 0.0987885205 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
15 Hb_000905_190 0.1002365128 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
16 Hb_168918_020 0.1004065139 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_000141_060 0.1016999053 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
18 Hb_006501_150 0.1024162008 - - conserved hypothetical protein [Ricinus communis]
19 Hb_143629_010 0.1032270941 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_005527_050 0.1035752459 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]

Gene co-expression network

sample Hb_012675_090 Hb_012675_090 Hb_010128_130 Hb_010128_130 Hb_012675_090--Hb_010128_130 Hb_003126_040 Hb_003126_040 Hb_012675_090--Hb_003126_040 Hb_143766_090 Hb_143766_090 Hb_012675_090--Hb_143766_090 Hb_001741_140 Hb_001741_140 Hb_012675_090--Hb_001741_140 Hb_001629_110 Hb_001629_110 Hb_012675_090--Hb_001629_110 Hb_010810_050 Hb_010810_050 Hb_012675_090--Hb_010810_050 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_000290_020 Hb_000290_020 Hb_003126_040--Hb_000290_020 Hb_004525_100 Hb_004525_100 Hb_003126_040--Hb_004525_100 Hb_004044_020 Hb_004044_020 Hb_003126_040--Hb_004044_020 Hb_003086_070 Hb_003086_070 Hb_003126_040--Hb_003086_070 Hb_000088_200 Hb_000088_200 Hb_003126_040--Hb_000088_200 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_000141_060 Hb_000141_060 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_000905_190 Hb_000905_190 Hb_001741_140--Hb_000905_190 Hb_001741_140--Hb_000107_050 Hb_007576_040 Hb_007576_040 Hb_001629_110--Hb_007576_040 Hb_000046_280 Hb_000046_280 Hb_001629_110--Hb_000046_280 Hb_001512_060 Hb_001512_060 Hb_001629_110--Hb_001512_060 Hb_000015_080 Hb_000015_080 Hb_001629_110--Hb_000015_080 Hb_063716_050 Hb_063716_050 Hb_001629_110--Hb_063716_050 Hb_006816_150 Hb_006816_150 Hb_010810_050--Hb_006816_150 Hb_010810_050--Hb_001221_230 Hb_010810_050--Hb_010128_130 Hb_052135_030 Hb_052135_030 Hb_010810_050--Hb_052135_030 Hb_005928_060 Hb_005928_060 Hb_010810_050--Hb_005928_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.9745 5.96503 14.1579 4.71647 40.2758 32.8694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8137 35.1624 14.0613 9.27521 9.8376

CAGE analysis