Hb_006816_150

Information

Type -
Description -
Location Contig6816: 102409-114964
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01030g
description POPTRDRAFT_894071; Lon protease 2 family protein
nr
ID XP_012088878.1
description PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
swissprot
ID P93655
description Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana GN=LON1 PE=1 SV=2
trembl
ID A0A067JKP3
description Lon protease homolog, mitochondrial OS=Jatropha curcas GN=JCGZ_23216 PE=3 SV=1
Gene Ontology
ID GO:0005759
description lon protease homolog mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_150 0.0 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
2 Hb_002784_040 0.0735530745 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
3 Hb_010810_050 0.0789762131 - - hypothetical protein [Cleome spinosa]
4 Hb_008578_010 0.0792009514 - - 30S ribosomal protein S19, putative [Ricinus communis]
5 Hb_000019_230 0.0900808613 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
6 Hb_001369_650 0.0932690246 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
7 Hb_003120_060 0.1007818489 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
8 Hb_005928_060 0.1016197942 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
9 Hb_000977_080 0.1019431346 - - type II inositol 5-phosphatase, putative [Ricinus communis]
10 Hb_052135_030 0.1021472346 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
11 Hb_000098_190 0.1022687272 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
12 Hb_003097_150 0.1044033349 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
13 Hb_003551_020 0.1047832763 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
14 Hb_001221_230 0.1060223803 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000045_130 0.1069783912 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
16 Hb_002408_010 0.1070144617 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_000035_380 0.1086709209 - - -
18 Hb_000009_550 0.1105807235 - - hypothetical protein RCOM_0603640 [Ricinus communis]
19 Hb_119583_010 0.112016461 - - 60S ribosomal protein L12A [Hevea brasiliensis]
20 Hb_010128_130 0.1130440032 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_150 Hb_006816_150 Hb_002784_040 Hb_002784_040 Hb_006816_150--Hb_002784_040 Hb_010810_050 Hb_010810_050 Hb_006816_150--Hb_010810_050 Hb_008578_010 Hb_008578_010 Hb_006816_150--Hb_008578_010 Hb_000019_230 Hb_000019_230 Hb_006816_150--Hb_000019_230 Hb_001369_650 Hb_001369_650 Hb_006816_150--Hb_001369_650 Hb_003120_060 Hb_003120_060 Hb_006816_150--Hb_003120_060 Hb_000098_190 Hb_000098_190 Hb_002784_040--Hb_000098_190 Hb_002784_040--Hb_008578_010 Hb_002784_040--Hb_001369_650 Hb_001623_330 Hb_001623_330 Hb_002784_040--Hb_001623_330 Hb_003001_060 Hb_003001_060 Hb_002784_040--Hb_003001_060 Hb_001221_230 Hb_001221_230 Hb_010810_050--Hb_001221_230 Hb_010128_130 Hb_010128_130 Hb_010810_050--Hb_010128_130 Hb_012675_090 Hb_012675_090 Hb_010810_050--Hb_012675_090 Hb_052135_030 Hb_052135_030 Hb_010810_050--Hb_052135_030 Hb_005928_060 Hb_005928_060 Hb_010810_050--Hb_005928_060 Hb_001021_230 Hb_001021_230 Hb_008578_010--Hb_001021_230 Hb_000742_140 Hb_000742_140 Hb_008578_010--Hb_000742_140 Hb_008578_010--Hb_000098_190 Hb_008578_010--Hb_001369_650 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_000019_230--Hb_003120_060 Hb_003038_030 Hb_003038_030 Hb_000019_230--Hb_003038_030 Hb_000188_100 Hb_000188_100 Hb_000019_230--Hb_000188_100 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_001369_650--Hb_003001_060 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003120_060--Hb_003038_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9906 1.96542 1.02814 0.824347 6.7897 6.31892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73384 6.76919 1.92204 1.5184 1.07208

CAGE analysis