Hb_001021_230

Information

Type -
Description -
Location Contig1021: 250825-259788
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01001: 250697-252350 , PASA_asmbl_01002: 250703-252402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_230 0.0 - - -
2 Hb_008578_010 0.0927532966 - - 30S ribosomal protein S19, putative [Ricinus communis]
3 Hb_000621_060 0.1130949225 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
4 Hb_000065_080 0.1179150647 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
5 Hb_003544_090 0.123737115 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
6 Hb_007632_250 0.1243265224 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000270_360 0.1311223451 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
8 Hb_025236_040 0.1329063391 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000157_030 0.1355652773 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
10 Hb_001009_040 0.1362425184 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
11 Hb_008406_160 0.1367960508 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
12 Hb_171554_090 0.1376817477 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
13 Hb_044662_040 0.1412630036 - - -
14 Hb_000098_190 0.1415143843 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
15 Hb_000438_170 0.1417486064 - - -
16 Hb_070739_010 0.1420114125 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
17 Hb_006816_500 0.1423785265 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
18 Hb_012675_090 0.1440004951 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
19 Hb_002284_090 0.1442255451 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
20 Hb_002784_040 0.1471910554 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]

Gene co-expression network

sample Hb_001021_230 Hb_001021_230 Hb_008578_010 Hb_008578_010 Hb_001021_230--Hb_008578_010 Hb_000621_060 Hb_000621_060 Hb_001021_230--Hb_000621_060 Hb_000065_080 Hb_000065_080 Hb_001021_230--Hb_000065_080 Hb_003544_090 Hb_003544_090 Hb_001021_230--Hb_003544_090 Hb_007632_250 Hb_007632_250 Hb_001021_230--Hb_007632_250 Hb_000270_360 Hb_000270_360 Hb_001021_230--Hb_000270_360 Hb_006816_150 Hb_006816_150 Hb_008578_010--Hb_006816_150 Hb_002784_040 Hb_002784_040 Hb_008578_010--Hb_002784_040 Hb_000742_140 Hb_000742_140 Hb_008578_010--Hb_000742_140 Hb_000098_190 Hb_000098_190 Hb_008578_010--Hb_000098_190 Hb_001369_650 Hb_001369_650 Hb_008578_010--Hb_001369_650 Hb_025236_040 Hb_025236_040 Hb_000621_060--Hb_025236_040 Hb_008406_160 Hb_008406_160 Hb_000621_060--Hb_008406_160 Hb_001009_040 Hb_001009_040 Hb_000621_060--Hb_001009_040 Hb_000621_060--Hb_000065_080 Hb_000258_410 Hb_000258_410 Hb_000621_060--Hb_000258_410 Hb_007632_090 Hb_007632_090 Hb_000621_060--Hb_007632_090 Hb_003874_020 Hb_003874_020 Hb_000065_080--Hb_003874_020 Hb_002107_160 Hb_002107_160 Hb_000065_080--Hb_002107_160 Hb_000065_080--Hb_001009_040 Hb_000065_080--Hb_025236_040 Hb_001278_110 Hb_001278_110 Hb_000065_080--Hb_001278_110 Hb_000209_090 Hb_000209_090 Hb_003544_090--Hb_000209_090 Hb_000003_090 Hb_000003_090 Hb_003544_090--Hb_000003_090 Hb_010128_130 Hb_010128_130 Hb_003544_090--Hb_010128_130 Hb_001741_140 Hb_001741_140 Hb_003544_090--Hb_001741_140 Hb_006816_500 Hb_006816_500 Hb_003544_090--Hb_006816_500 Hb_004204_200 Hb_004204_200 Hb_003544_090--Hb_004204_200 Hb_000617_320 Hb_000617_320 Hb_007632_250--Hb_000617_320 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_119583_010 Hb_119583_010 Hb_007632_250--Hb_119583_010 Hb_004502_030 Hb_004502_030 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_000270_840 Hb_000270_840 Hb_000270_360--Hb_000270_840 Hb_002942_020 Hb_002942_020 Hb_000270_360--Hb_002942_020 Hb_006501_150 Hb_006501_150 Hb_000270_360--Hb_006501_150 Hb_000270_360--Hb_027892_060 Hb_007441_340 Hb_007441_340 Hb_000270_360--Hb_007441_340 Hb_012675_090 Hb_012675_090 Hb_000270_360--Hb_012675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.05621 0.78879 1.36078 0.461621 3.719 4.44442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03832 3.85955 0.355448 1.4603 0.789283

CAGE analysis