Hb_000065_080

Information

Type -
Description -
Location Contig65: 217428-220918
Sequence    

Annotation

kegg
ID egr:104437539
description omega-6 fatty acid desaturase, chloroplastic-like
nr
ID XP_010265606.1
description PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
swissprot
ID P48627
description Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1
trembl
ID C6T9N4
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0009941
description omega-6 fatty acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000065_080 0.0 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
2 Hb_003874_020 0.0929024768 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
3 Hb_002107_160 0.101140996 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
4 Hb_001009_040 0.1018443841 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
5 Hb_000621_060 0.1020593523 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
6 Hb_025236_040 0.1024510447 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001278_110 0.1056742778 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
8 Hb_002301_280 0.1082674801 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
9 Hb_004297_070 0.1086102764 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
10 Hb_073367_010 0.1087403969 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
11 Hb_001158_220 0.1102149622 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
12 Hb_005389_150 0.1110394922 - - conserved hypothetical protein [Ricinus communis]
13 Hb_070739_010 0.1138754149 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
14 Hb_003266_050 0.1152169614 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
15 Hb_002272_260 0.1168220735 - - -
16 Hb_001021_230 0.1179150647 - - -
17 Hb_000157_030 0.1182564979 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
18 Hb_007632_090 0.1186045311 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
19 Hb_000617_320 0.1197049517 - - 40S ribosomal protein S21B [Hevea brasiliensis]
20 Hb_000808_040 0.1203059731 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000065_080 Hb_000065_080 Hb_003874_020 Hb_003874_020 Hb_000065_080--Hb_003874_020 Hb_002107_160 Hb_002107_160 Hb_000065_080--Hb_002107_160 Hb_001009_040 Hb_001009_040 Hb_000065_080--Hb_001009_040 Hb_000621_060 Hb_000621_060 Hb_000065_080--Hb_000621_060 Hb_025236_040 Hb_025236_040 Hb_000065_080--Hb_025236_040 Hb_001278_110 Hb_001278_110 Hb_000065_080--Hb_001278_110 Hb_009767_120 Hb_009767_120 Hb_003874_020--Hb_009767_120 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_000690_080 Hb_000690_080 Hb_003874_020--Hb_000690_080 Hb_001158_220 Hb_001158_220 Hb_002107_160--Hb_001158_220 Hb_000157_030 Hb_000157_030 Hb_002107_160--Hb_000157_030 Hb_010691_060 Hb_010691_060 Hb_002107_160--Hb_010691_060 Hb_002495_040 Hb_002495_040 Hb_002107_160--Hb_002495_040 Hb_000120_500 Hb_000120_500 Hb_002107_160--Hb_000120_500 Hb_000465_430 Hb_000465_430 Hb_002107_160--Hb_000465_430 Hb_000169_010 Hb_000169_010 Hb_001009_040--Hb_000169_010 Hb_005389_150 Hb_005389_150 Hb_001009_040--Hb_005389_150 Hb_000808_040 Hb_000808_040 Hb_001009_040--Hb_000808_040 Hb_061908_010 Hb_061908_010 Hb_001009_040--Hb_061908_010 Hb_001009_040--Hb_001158_220 Hb_008406_160 Hb_008406_160 Hb_001009_040--Hb_008406_160 Hb_000621_060--Hb_025236_040 Hb_000621_060--Hb_008406_160 Hb_000621_060--Hb_001009_040 Hb_000258_410 Hb_000258_410 Hb_000621_060--Hb_000258_410 Hb_007632_090 Hb_007632_090 Hb_000621_060--Hb_007632_090 Hb_001951_260 Hb_001951_260 Hb_025236_040--Hb_001951_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_000084_290 Hb_000084_290 Hb_025236_040--Hb_000084_290 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_002685_190 Hb_002685_190 Hb_001278_110--Hb_002685_190 Hb_003266_050 Hb_003266_050 Hb_001278_110--Hb_003266_050 Hb_004297_070 Hb_004297_070 Hb_001278_110--Hb_004297_070 Hb_002284_090 Hb_002284_090 Hb_001278_110--Hb_002284_090 Hb_181288_010 Hb_181288_010 Hb_001278_110--Hb_181288_010 Hb_000300_610 Hb_000300_610 Hb_001278_110--Hb_000300_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80265 0.686858 1.21187 1.09412 2.36713 4.45926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17387 3.28127 0.676004 0.74437 0.624439

CAGE analysis