Hb_001951_260

Information

Type -
Description -
Location Contig1951: 225678-228279
Sequence    

Annotation

kegg
ID rcu:RCOM_0379000
description 60S ribosomal protein L32, putative
nr
ID XP_002533495.1
description 60S ribosomal protein L32, putative [Ricinus communis]
swissprot
ID P49211
description 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2
trembl
ID B9T5H6
description 60S ribosomal protein L32, putative OS=Ricinus communis GN=RCOM_0379000 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l32-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19521: 225670-228173 , PASA_asmbl_19522: 226761-226936
cDNA
(Sanger)
(ID:Location)		 003_K18.ab1: 225670-228072 , 019_A23.ab1: 225747-228032 , 022_A24.ab1: 225731-239489 , 024_O17.ab1: 225674-227814 , 042_I20.ab1: 225743-228083 , 053_I24.ab1: 225744-228107

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_260 0.0 - - 60S ribosomal protein L32, putative [Ricinus communis]
2 Hb_025236_040 0.0599349397 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000290_020 0.0881304792 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
4 Hb_004032_060 0.090430666 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
5 Hb_000084_290 0.0906996735 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
6 Hb_007558_010 0.094121532 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
7 Hb_001047_100 0.0980830098 - - 40S ribosomal protein S18, putative [Ricinus communis]
8 Hb_004447_030 0.0992460797 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
9 Hb_007007_050 0.0993670993 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
10 Hb_003746_040 0.1000579466 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
11 Hb_000670_020 0.1007643335 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
12 Hb_011848_010 0.1008545375 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
13 Hb_003752_080 0.1019749782 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
14 Hb_002687_140 0.1022974869 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
15 Hb_017259_010 0.1023918892 - - -
16 Hb_002292_010 0.1027127715 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
17 Hb_001348_070 0.104649092 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_019962_030 0.1062739044 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
19 Hb_097783_020 0.1067495788 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
20 Hb_001142_050 0.1075682085 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_260 Hb_001951_260 Hb_025236_040 Hb_025236_040 Hb_001951_260--Hb_025236_040 Hb_000290_020 Hb_000290_020 Hb_001951_260--Hb_000290_020 Hb_004032_060 Hb_004032_060 Hb_001951_260--Hb_004032_060 Hb_000084_290 Hb_000084_290 Hb_001951_260--Hb_000084_290 Hb_007558_010 Hb_007558_010 Hb_001951_260--Hb_007558_010 Hb_001047_100 Hb_001047_100 Hb_001951_260--Hb_001047_100 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_025236_040--Hb_000290_020 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_000307_170 Hb_000307_170 Hb_004032_060--Hb_000307_170 Hb_000482_110 Hb_000482_110 Hb_004032_060--Hb_000482_110 Hb_004032_050 Hb_004032_050 Hb_004032_060--Hb_004032_050 Hb_004032_060--Hb_000290_020 Hb_004032_060--Hb_025236_040 Hb_000742_140 Hb_000742_140 Hb_000084_290--Hb_000742_140 Hb_009767_120 Hb_009767_120 Hb_000084_290--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000084_290--Hb_011828_050 Hb_000349_060 Hb_000349_060 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010 Hb_005535_050 Hb_005535_050 Hb_007558_010--Hb_005535_050 Hb_001504_070 Hb_001504_070 Hb_007558_010--Hb_001504_070 Hb_007558_010--Hb_011828_050 Hb_007441_210 Hb_007441_210 Hb_007558_010--Hb_007441_210 Hb_019962_030 Hb_019962_030 Hb_007558_010--Hb_019962_030 Hb_105386_010 Hb_105386_010 Hb_001047_100--Hb_105386_010 Hb_001047_100--Hb_003746_040 Hb_000189_340 Hb_000189_340 Hb_001047_100--Hb_000189_340 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
272.35 85.9348 154.573 83.2803 283.306 259.919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
195.283 273.92 56.6565 59.1464 24.1046

CAGE analysis