Hb_001504_070

Information

Type -
Description -
Location Contig1504: 58017-61065
Sequence    

Annotation

kegg
ID rcu:RCOM_0470950
description 60S ribosomal protein L7, putative
nr
ID XP_012067523.1
description PREDICTED: 60S ribosomal protein L7-1 [Jatropha curcas]
swissprot
ID Q9SAI5
description 60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1
trembl
ID A0A067LD14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27007 PE=3 SV=1
Gene Ontology
ID GO:0005730
description 60s ribosomal protein l7-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12641: 57982-61053 , PASA_asmbl_12642: 58248-60981
cDNA
(Sanger)
(ID:Location)		 017_F21.ab1: 58349-60989 , 018_L18.ab1: 58266-60992 , 032_G06.ab1: 58339-61038 , 052_N19.ab1: 58355-61038 , 053_B10.ab1: 58324-61038

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_070 0.0 - - PREDICTED: 60S ribosomal protein L7-1 [Jatropha curcas]
2 Hb_007007_050 0.0991205759 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
3 Hb_000976_270 0.1033515243 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
4 Hb_010128_130 0.1070217702 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
5 Hb_019962_030 0.1072920137 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
6 Hb_007558_010 0.1083649529 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
7 Hb_005535_050 0.1083716347 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
8 Hb_003544_090 0.1091079958 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
9 Hb_001014_050 0.1138381 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
10 Hb_000768_050 0.1147338741 - - hypothetical protein RCOM_0845740 [Ricinus communis]
11 Hb_004525_100 0.1157331308 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
12 Hb_003752_080 0.1160667799 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
13 Hb_001663_110 0.1162921801 - - RNA binding protein, putative [Ricinus communis]
14 Hb_006816_500 0.1168609654 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
15 Hb_001575_100 0.118090547 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]
16 Hb_001623_370 0.1194322035 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001898_230 0.1196537913 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
18 Hb_004044_020 0.1205390208 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
19 Hb_143766_090 0.1207801265 - - 60S ribosomal protein L31B [Hevea brasiliensis]
20 Hb_003467_010 0.1210267053 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_070 Hb_001504_070 Hb_007007_050 Hb_007007_050 Hb_001504_070--Hb_007007_050 Hb_000976_270 Hb_000976_270 Hb_001504_070--Hb_000976_270 Hb_010128_130 Hb_010128_130 Hb_001504_070--Hb_010128_130 Hb_019962_030 Hb_019962_030 Hb_001504_070--Hb_019962_030 Hb_007558_010 Hb_007558_010 Hb_001504_070--Hb_007558_010 Hb_005535_050 Hb_005535_050 Hb_001504_070--Hb_005535_050 Hb_002292_010 Hb_002292_010 Hb_007007_050--Hb_002292_010 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330 Hb_001663_110 Hb_001663_110 Hb_000976_270--Hb_001663_110 Hb_000205_120 Hb_000205_120 Hb_000976_270--Hb_000205_120 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_004447_030 Hb_004447_030 Hb_000976_270--Hb_004447_030 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_001956_120 Hb_001956_120 Hb_000976_270--Hb_001956_120 Hb_001741_140 Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_001951_260 Hb_001951_260 Hb_007558_010--Hb_001951_260 Hb_007558_010--Hb_005535_050 Hb_011828_050 Hb_011828_050 Hb_007558_010--Hb_011828_050 Hb_007441_210 Hb_007441_210 Hb_007558_010--Hb_007441_210 Hb_007558_010--Hb_019962_030 Hb_005535_050--Hb_010128_130 Hb_000473_040 Hb_000473_040 Hb_005535_050--Hb_000473_040 Hb_001369_650 Hb_001369_650 Hb_005535_050--Hb_001369_650 Hb_143766_090 Hb_143766_090 Hb_005535_050--Hb_143766_090 Hb_005332_070 Hb_005332_070 Hb_005535_050--Hb_005332_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
272.628 80.946 58.0507 41.7663 161.177 171.709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.851 193.688 40.4341 49.5627 36.6677

CAGE analysis