Hb_001898_230

Information

Type -
Description -
Location Contig1898: 215818-222691
Sequence    

Annotation

kegg
ID rcu:RCOM_0758190
description nucleic acid binding protein, putative
nr
ID XP_012066698.1
description PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
swissprot
ID Q8GWR3
description KH domain-containing protein At1g09660/At1g09670 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1
trembl
ID A0A067LD84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00257 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding kh domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18849: 215960-222671 , PASA_asmbl_18853: 219123-219501 , PASA_asmbl_18854: 218836-219059 , PASA_asmbl_18855: 215980-222665
cDNA
(Sanger)
(ID:Location)		 015_A10.ab1: 215960-220205 , 022_B16.ab1: 215973-221926 , 036_J10.ab1: 215960-221941 , 043_C09.ab1: 215960-220175

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_230 0.0 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
2 Hb_019962_030 0.0723186298 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
3 Hb_007164_020 0.0761003311 - - hypothetical protein glysoja_025872 [Glycine soja]
4 Hb_001511_020 0.0780320332 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
5 Hb_000089_220 0.0881429998 - - PREDICTED: protein FAM133-like [Populus euphratica]
6 Hb_000473_040 0.0890099514 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
7 Hb_007007_050 0.0894889635 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
8 Hb_005332_070 0.0905339744 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
9 Hb_001301_160 0.0906792483 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
10 Hb_005535_050 0.0940617149 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
11 Hb_000663_040 0.0941272311 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
12 Hb_000394_190 0.0941896364 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_002192_080 0.0949870842 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
14 Hb_135545_010 0.0954688434 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_000046_300 0.0955603884 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_000162_090 0.0958430484 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
17 Hb_012799_110 0.0972873021 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
18 Hb_134951_010 0.0977207658 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
19 Hb_001014_050 0.0981837075 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
20 Hb_000000_080 0.098222267 - - lipoate-protein ligase B, putative [Ricinus communis]

Gene co-expression network

sample Hb_001898_230 Hb_001898_230 Hb_019962_030 Hb_019962_030 Hb_001898_230--Hb_019962_030 Hb_007164_020 Hb_007164_020 Hb_001898_230--Hb_007164_020 Hb_001511_020 Hb_001511_020 Hb_001898_230--Hb_001511_020 Hb_000089_220 Hb_000089_220 Hb_001898_230--Hb_000089_220 Hb_000473_040 Hb_000473_040 Hb_001898_230--Hb_000473_040 Hb_007007_050 Hb_007007_050 Hb_001898_230--Hb_007007_050 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_007164_020--Hb_001504_150 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_000085_240 Hb_000085_240 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_001439_150 Hb_001439_150 Hb_001511_020--Hb_001439_150 Hb_001301_160 Hb_001301_160 Hb_001511_020--Hb_001301_160 Hb_000162_090 Hb_000162_090 Hb_001511_020--Hb_000162_090 Hb_001623_420 Hb_001623_420 Hb_001511_020--Hb_001623_420 Hb_003642_060 Hb_003642_060 Hb_001511_020--Hb_003642_060 Hb_002685_140 Hb_002685_140 Hb_001511_020--Hb_002685_140 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_011360_140 Hb_011360_140 Hb_000473_040--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_000473_040--Hb_012762_050 Hb_135545_010 Hb_135545_010 Hb_000473_040--Hb_135545_010 Hb_005332_070 Hb_005332_070 Hb_000473_040--Hb_005332_070 Hb_002007_060 Hb_002007_060 Hb_000473_040--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_000473_040--Hb_011571_020 Hb_002292_010 Hb_002292_010 Hb_007007_050--Hb_002292_010 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_007007_050--Hb_000359_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
326.317 145.149 137.336 62.2022 205.641 277.217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.71 267.993 156.34 60.04 59.7108

CAGE analysis