Hb_000003_090

Information

Type -
Description -
Location Contig3: 45828-49026
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31362: 43485-44954 , PASA_asmbl_31363: 45893-49111 , PASA_asmbl_31364: 45893-49111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_090 0.0 - - -
2 Hb_001741_140 0.0749924794 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_000176_110 0.0773239026 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
4 Hb_006637_060 0.0864102917 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
5 Hb_003544_090 0.0912794414 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
6 Hb_010128_130 0.0951317511 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
7 Hb_001221_230 0.0957170013 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000322_050 0.096114797 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
9 Hb_004204_200 0.0966173345 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
10 Hb_001855_010 0.0982716598 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
11 Hb_000077_050 0.1000569836 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000209_090 0.1005616731 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_000997_020 0.1006027369 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
14 Hb_003453_020 0.1011950568 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
15 Hb_150069_020 0.1012973886 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
16 Hb_118419_020 0.1017927646 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
17 Hb_002997_170 0.1018832011 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
18 Hb_029510_140 0.101903187 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
19 Hb_000365_360 0.1021271732 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_002942_020 0.1031861136 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_090 Hb_000003_090 Hb_001741_140 Hb_001741_140 Hb_000003_090--Hb_001741_140 Hb_000176_110 Hb_000176_110 Hb_000003_090--Hb_000176_110 Hb_006637_060 Hb_006637_060 Hb_000003_090--Hb_006637_060 Hb_003544_090 Hb_003544_090 Hb_000003_090--Hb_003544_090 Hb_010128_130 Hb_010128_130 Hb_000003_090--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_000003_090--Hb_001221_230 Hb_001741_140--Hb_010128_130 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_000905_190 Hb_000905_190 Hb_001741_140--Hb_000905_190 Hb_000107_050 Hb_000107_050 Hb_001741_140--Hb_000107_050 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_000847_070 Hb_000847_070 Hb_006637_060--Hb_000847_070 Hb_003638_140 Hb_003638_140 Hb_006637_060--Hb_003638_140 Hb_006637_060--Hb_000176_110 Hb_004502_030 Hb_004502_030 Hb_006637_060--Hb_004502_030 Hb_002681_140 Hb_002681_140 Hb_006637_060--Hb_002681_140 Hb_000209_090 Hb_000209_090 Hb_003544_090--Hb_000209_090 Hb_003544_090--Hb_010128_130 Hb_003544_090--Hb_001741_140 Hb_006816_500 Hb_006816_500 Hb_003544_090--Hb_006816_500 Hb_004204_200 Hb_004204_200 Hb_003544_090--Hb_004204_200 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001214_130 Hb_001214_130 Hb_001221_230--Hb_001214_130 Hb_001221_230--Hb_001741_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.654 1.30027 2.25352 2.69891 12.0107 15.3522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.90354 8.95227 4.74291 3.45368 3.17054

CAGE analysis